Contig 006811:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011N18Sequence573006811 (4)emb|CDP09412.1|7e-97unnamed protein product [Coffea canephora]773006811 (4)ref|XP_011097181.1|2e-119PREDICTED: 40S ribosomal protein S7 [Sesamum indicum]
JMFF023J13Sequence413006811 (4)emb|CDP09412.1|2e-61unnamed protein product [Coffea canephora]701006811 (4)ref|XP_010264271.1|3e-107PREDICTED: 40S ribosomal protein S7 [Nelumbo nucifera]

Alignment

This contig is upended


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JMFF023J13-                                                     CTCCGCCATCTCCGAAGC
JMFF011N18-                                                     CTCCGCCATCTCCGAAGC
                      ____________________________________________________________
consensus                                                       CTCCGCCATCTCCGAAGC
 
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JMFF023J13-           CGAAGGTAGGGTTCAGACTTGATAGCTCTCTCTCTCTCTACGTACAGGCCCGGTCGGCTA
JMFF011N18-           CGAAGGTAGGGTTCAGACTTGATAGCTCTCTCTCTCTCTACGTACAGGCCCGGTCGGCTA
                      ____________________________________________________________
consensus             CGAAGGTAGGGTTCAGACTTGATAGCTCTCTCTCTCTCTACGTACAGGCCCGGTCGGCTA
 
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JMFF023J13-           TCTGTTTGCTAGAAGGTTTCAAAATGTACACTGCACTGCAGAAGATTCACAAGGATAAGG
JMFF011N18-           TCTGTTTGCTAGAAGGTTTCAAAATGTACACTGCACTGCAGAAGATTCACAAGGATAAGG
rJMFF011N18+                 GCTAGAAGGTTTCAAAATGTACACTGCACTGCAGAAGATTCACAAGGATAAGG
                      ____________________________________________________________
consensus             TCTGTTTGCTAGAAGGTTTCAAAATGTACACTGCACTGCAGAAGATTCACAAGGATAAGG
 
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JMFF023J13-           ATGTTGAACCATCTGAGTTTGAGGAGACTGTTGCCCAGGCATTTTTTGACTTGGAAAATA
JMFF011N18-           ATGTTGAACCATCTGAGTTTGAGGAGACTGTTGCCCAGGCATTTTTTGACTTGGAAAATA
rJMFF023J13+                            TTGAGGAGACTGTTGCCCAGGCATTTTTTGACTTGGAAAATA
rJMFF011N18+          ATGTTGAACCATCTGAGTTTGAGGAGACTGTTGCCCAGGCATTTTTTGACTTGGAAAATA
                      ____________________________________________________________
consensus             ATGTTGAACCATCTGAGTTTGAGGAGACTGTTGCCCAGGCATTTTTTGACTTGGAAAATA
 
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JMFF023J13-           CCAACCAAGAGCTTAAGAGTGATCTAAAGGACCTCTATATTAACTCTGCTGTTCAGATTG
JMFF011N18-           CCAACCAAGAGCTTAAGAGTGATCTAAAGGACCTCTATATTAACTCTGCTGTTCAGATTG
rJMFF023J13+          CCAACCAAGAGCTTAAGAGTGATCTAAAGGACCTCTATATTAACTCTGCTGTTCAGATTG
rJMFF011N18+          CCAACCAAGAGCTTAAGAGTGATCTAAAGGACCTCTATATTAACTCTGCTGTTCAGATTG
                      ____________________________________________________________
consensus             CCAACCAAGAGCTTAAGAGTGATCTAAAGGACCTCTATATTAACTCTGCTGTTCAGATTG
 
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JMFF023J13-           ACATTTCTGGGAACCGCAAAGCTGTTGTGATCCATGTCCCTTACAGATTAAGGAAAGCTT
JMFF011N18-           ACATTTCTGGGAACCGCAAAGCTGTTGTGATCCATGTCCCTTACAGATTAAGGAAAGCTT
rJMFF023J13+          ACATTTCTGGGAACCGCAAAGCTGTTGTGATCCATGTCCCTTACAGATTAAGGAAAGCTT
rJMFF011N18+          ACATTTCTGGGAACCGCAAAGCTGTTGTGATCCATGTCCCTTACAGATTAAGGAAAGCTT
                      ____________________________________________________________
consensus             ACATTTCTGGGAACCGCAAAGCTGTTGTGATCCATGTCCCTTACAGATTAAGGAAAGCTT
 
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JMFF023J13-           TCCGTAAGATTCACCTTAGGCTTGTCAGAGAGCTTGAGAAAAAGTTCAGTGGGAAGGATG
JMFF011N18-           TCCGTAAGATTCACCTTAGGCTTGTCAGAGAGCTTGAGAAAAAGTTCAGTGGGAAGGATG
rJMFF023J13+          TCCGTAAGATTCACCTTAGGCTTGTCAGAGAGCTTGAGAAAAAGTTCAGTGGGAAGGATG
rJMFF011N18+          TCCGTAAGATTCACCTTAGGCTTGTCAGAGAGCTTGAGAAAAAGTTCAGTGGGAAGGATG
                      ____________________________________________________________
consensus             TCCGTAAGATTCACCTTAGGCTTGTCAGAGAGCTTGAGAAAAAGTTCAGTGGGAAGGATG
 
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JMFF023J13-           TTGTTCTTGTTGCTACGAGAAGGATAGCACGTCC                          
JMFF011N18-           TTGTTCTTGTTGCTACGAGAAGGATAGCACGTCCACCAAAAAGGGGCTCTGCTGTACAGA
rJMFF023J13+          TTGTTCTTGTTGCTACGAGAAGGATAGCACGTCCACCAAAAAGGGGCTCTGCTGTACAGA
rJMFF011N18+          TTGTTCTTGTTGCTACGAGAAGGATAGCACGTCCACCAAAAAGGGGCTCTGCTGTACAGA
                      ____________________________________________________________
consensus             TTGTTCTTGTTGCTACGAGAAGGATAGCACGTCCACCAAAAAGGGGCTCTGCTGTACAGA
 
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JMFF011N18-           GACCTCGCTCTCGGACACTTACAGCTGTGCATGAGGCAATTCTTGAGGATCTAGTGTACC
rJMFF023J13+          GACCTCGCTCTCGGACACTTACAGCTGTGCATGAGGCAATTCTTGAGGATCTAGTGTACC
rJMFF011N18+          GACCTCGCTCTCGGACACTTACAGCTGTGCATGAGGCAATTCTTGAGGATCTAGTGTACC
                      ____________________________________________________________
consensus             GACCTCGCTCTCGGACACTTACAGCTGTGCATGAGGCAATTCTTGAGGATCTAGTGTACC
 
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JMFF011N18-           CTGCTGAGATTGTANGAAAGCGCATCAGATACCGTATTGATGGTTCAAAAATAATGAAGG
rJMFF023J13+          CTGCTGAGATTGTAGGAAAGCGCATCAGATACCGTATTGATGGTTCAAAAATAATGAAGG
rJMFF011N18+          CTGCTGAGATTGTAGGAAAGCGCATCAGATACCGTATTGATGGTTCAAAAATAATGAAGG
                      ____________________________________________________________
consensus             CTGCTGAGATTGTAGGAAAGCGCATCAGATACCGTATTGATGGTTCAAAAATAATGAAGG
 
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JMFF011N18-           TTTTCTTGGATCCAA                                             
rJMFF023J13+          TTTTCTTGGATCCAAAGTTCAGGAATGACACTGAATACAAATTAGAGACATATGCTGGTG
rJMFF011N18+          TTTTCTTGGATCCAAAGTTCAGGAATGACACTGAATACAAATTAGAGACATATGCTGGTG
                      ____________________________________________________________
consensus             TTTTCTTGGATCCAAAGTTCAGGAATGACACTGAATACAAATTAGAGACATATGCTGGTG
 
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rJMFF023J13+          TCTACAGGAAGCTTTCAGGGAAAGATGTTGTCTTTGAATATCCAATAACTGAAGCTTAAG
rJMFF011N18+          TCTACAGGAAGCTTTCAGGGAAAGATGTTGTCTTTGAATATCCAATAACTGAAGCTTAAG
                      ____________________________________________________________
consensus             TCTACAGGAAGCTTTCAGGGAAAGATGTTGTCTTTGAATATCCAATAACTGAAGCTTAAG
 
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rJMFF023J13+          AGGGCCTTTCTTTTCCTGTTTGATACGTGTCTTAAGTTGAAGCATGTCTGCTTTTATTGT
rJMFF011N18+          AGGGCCTTTCTTTTCCTGTTTGATACGTGTCTTAAGTTGAAGCATGTCTGCTTTTATTGT
                      ____________________________________________________________
consensus             AGGGCCTTTCTTTTCCTGTTTGATACGTGTCTTAAGTTGAAGCATGTCTGCTTTTATTGT
 
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rJMFF023J13+          CTAGGCTTTCTGAAATTTTTTTGATTGGCAAACATTTCCTTCAGAAGTGAGAATATTTAT
rJMFF011N18+          CTAGGCTTTCTGAAATTTTTTTGATTGGCAAACATTTCCTTCAGAAGTGAGAATATTTAT
                      ____________________________________________________________
consensus             CTAGGCTTTCTGAAATTTTTTTGATTGGCAAACATTTCCTTCAGAAGTGAGAATATTTAT
 
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rJMFF023J13+          GAAAGATTGTTTGTGATTAGTCTTGGAAAAAGTTTGGTTGAACTTTCATACNGAAACAA 
rJMFF011N18+          GAAAGATTGTTTGTGATTAGTCTTGGAAAAAGTTTGGTTGAACTTTCATACNGAAACAAA
                      ____________________________________________________________
consensus             GAAAGATTGTTTGTGATTAGTCTTGGAAAAAGTTTGGTTGAACTTTCATACNGAAACAAA