Contig 006810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011M05Sequence561011497 (2)ref|XP_006357090.1|9e-83PREDICTED: transmembrane 9 superfamily member 4-like [Solanum tuberosum]696006810 (3)gb|KJB68420.1|4e-58hypothetical protein B456_010G244500 [Gossypium raimondii]
JMSF009P01Sequence561006810 (3)gb|KJB68420.1|3e-44hypothetical protein B456_010G244500 [Gossypium raimondii]
JMSF032E09Sequence723011497 (2)ref|XP_006357090.1|5e-129PREDICTED: transmembrane 9 superfamily member 4-like [Solanum tuberosum]712006810 (3)gb|KJB68420.1|2e-73hypothetical protein B456_010G244500 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF032E09+                                       GGGCAGTTATGTTGGTTTCAAGAAACCCNGT
                      ____________________________________________________________
consensus                                          GGGCAGTTATGTTGGTTTCAAGAAACCCNGT
 
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rJMSF032E09+          CATCGAGGATCCTGTGAAGACTAATAAAAATACCAAGGCAAATCCCCGAGCAGGCTTGGT
                      ____________________________________________________________
consensus             CATCGAGGATCCTGTGAAGACTAATAAAAATACCAAGGCAAATCCCCGAGCAGGCTTGGT
 
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rJMSF032E09+          ACATGAACCNTATATTCTCGGTTCTAATTGGAGGCATACTCCCATTCGGAGCTGTTTTCA
rJMFF011M05+                                  TAATTGGAGGCATACTCCCATTCGGAGCTGTTTTCA
                      ____________________________________________________________
consensus             ACATGAACCNTATATTCTCGGTTCTAATTGGAGGCATACTCCCATTCGGAGCTGTTTTCA
 
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rJMSF032E09+          TTGAGCTCTTCTTCATCCTCACCTCCATTTGGCTGAACCAGTTTTACTACCTCTTTGGGT
rJMSF009P01+                   TCTTCATCCTCACCTCCATTTGGCTGAACCAGTTTTACTACCTCTTTGGGN
rJMFF011M05+          TTGAGCTCTTCTTCATCCTCACCTCCATTTGGCTGAACCAGTTTTACTACCTCTTTGGGT
                      ____________________________________________________________
consensus             TTGAGCTCTTCTTCATCCTCACCTCCATTTGGCTGAACCAGTTTTACTACCTCTTTGGGT
 
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rJMSF032E09+          TCCTCTTCATTGTCTTCATCATTCTGATTGTCACGTGTGCAGAAATAACAATTGTGTTAT
rJMSF009P01+          TCCTCTTCATTGTCTTCATCATTCTGATTGTCACGTGTGCAGAAATAACAATTGTGTTAT
rJMFF011M05+          TCCTCTTCATTGTCTTCATCATTCTGATTGTCACGTGTGCAGAAATAACAATTGTGTTAT
                      ____________________________________________________________
consensus             TCCTCTTCATTGTCTTCATCATTCTGATTGTCACGTGTGCAGAAATAACAATTGTGTTAT
 
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rJMSF032E09+          GTTATTTCCAGTTATGCAGTGAAGACTACCTATGGTGGTGGCGATCTTACCTAACATCAG
rJMSF009P01+          GTTATTTCCAGTTATGCAGTGAAGACTACCTATGGTGGTGGCGATCTTACCTAACATCAG
rJMFF011M05+          GTTATTTCCAGTTATGCAGTGAAGACTACCTATGGTGGTGGCGATCTTACCTAACATCAG
                      ____________________________________________________________
consensus             GTTATTTCCAGTTATGCAGTGAAGACTACCTATGGTGGTGGCGATCTTACCTAACATCAG
 
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rJMSF032E09+          GCTCATCAGCACTCTACCTATTCCTCTACGCTACCTTCTATTTCTTCACCAAACTGGAGA
rJMSF009P01+          GCTCATCAGCACTCTACCTATTCCTCTACGCTACCTTCTATTTCTTCACCAAACTGGAGA
rJMFF011M05+          GCTCATCAGCACTCTACCTATTCCTCTACGCTACCTTCTATTTCTTCACCAAACTGGAGA
                      ____________________________________________________________
consensus             GCTCATCAGCACTCTACCTATTCCTCTACGCTACCTTCTATTTCTTCACCAAACTGGAGA
 
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rJMSF032E09+          TTACAAAGCCTGTTTCTGGAATATTGTATTTCGGTTACATGCTCATTGCTTCTTACGCAT
rJMSF009P01+          TTACAAAGCCTGTTTCTGGAATATTGTATTTCGGNTACATGCTCATTGCTTCTTACGCAT
rJMFF011M05+          TTACAAAGCCTGTTTCTGGAATATTGTATTTCGGTTACATGCTCATTGCTTCTTACGCAT
                      ____________________________________________________________
consensus             TTACAAAGCCTGTTTCTGGAATATTGTATTTCGGTTACATGCTCATTGCTTCTTACGCAT
 
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rJMSF032E09+          TTTTTGTGCTCACTGGCACTATCGGTTTCTACGCTTGCTTCTGGTTCACAAGGCTCATAT
rJMSF009P01+          TTTTTGTGCTCACNGGCACTATNGGNTTNTACGCNTGNTTNTGGTTCACAAGGCTCATAT
rJMFF011M05+          TTTTTGTGCTCACTGGCACTATCGGTTTCTACGCTTGCTTCTGGTTCACAAGGCTCATAT
                      ____________________________________________________________
consensus             TTTTTGTGCTCACTGGCACTATCGGTTTCTACGCTTGCTTCTGGTTCACAAGGCTCATAT
 
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rJMSF032E09+          ACTCTTCCGTCAAGATCGACTGATTGGCTACAAGCTGCTAGTAGGCCTCCTCATCGTATG
rJMSF009P01+          ACTCTTCCGTCAAGATCGACTGATTGGNTACAAGCTGCTAGTAGGCCTCCTCATCGTATG
rJMFF011M05+          ACTCTTCCGTCAAGATCGACTGATTGGCTACAAGCTGCTAGTAGGCCTCCTCATCGTATG
                      ____________________________________________________________
consensus             ACTCTTCCGTCAAGATCGACTGATTGGCTACAAGCTGCTAGTAGGCCTCCTCATCGTATG
 
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rJMSF032E09+          GCTCTTAGGTATCTTCTTTACATATGCAGTTCCTGAACATGAATATTGTTTCATTTTTGT
rJMSF009P01+          GCTCTTAGGTATCTTCTTTACATATGCAGTTCCTGAACATGAATATTGNTTCATTNTNGT
rJMFF011M05+          GCTCTTAGGTATCTTCTTTACATATGCAGTTCCTGAACATGAATATTGTTTCATTTTTGT
                      ____________________________________________________________
consensus             GCTCTTAGGTATCTTCTTTACATATGCAGTTCCTGAACATGAATATTGTTTCATTTTTGT
 
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rJMSF032E09+          AGTTTTACCCAGAAATAGTTCGACCAAGAACTTGAAAAATGTTCTTTATAAAGGCTTAAG
rJMSF009P01+          AGTTTTACCCAGAAATAGTTCGACCAAGAACTNGAAAAATGTTCNNTATAAAGGCTNAAG
rJMFF011M05+          AGTTTTACCCAGAAATAGTTCGACCAAGAACTTGAAAAATGTTCTTTATAAAGGCTTAAG
                      ____________________________________________________________
consensus             AGTTTTACCCAGAAATAGTTCGACCAAGAACTTGAAAAATGTTCTTTATAAAGGCTTAAG
 
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rJMSF032E09+          TCTATAT                                                     
rJMSF009P01+          TCTATATNTTGTAACACATCCAG                                     
rJMFF011M05+          TCTATATATTGTAACACATCCAGTTTGAACTTCATTCTATACAGACCATTCATGAAAATT
                      ____________________________________________________________
consensus             TCTATATATTGTAACACATCCAGTTTGAACTTCATTCTATACAGACCATTCATGAAAATT
 
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rJMFF011M05+          CAACAAGTGATTCTAATGAATCTCTTGCCTGGCCGGATACTCAATCTGTTTATACAGAAT
                      ____________________________________________________________
consensus             CAACAAGTGATTCTAATGAATCTCTTGCCTGGCCGGATACTCAATCTGTTTATACAGAAT