Contig 006805:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004I20Sequence498009168 (5)ref|XP_009802962.1|8e-22PREDICTED: R3H domain-containing protein 2-like isoform X1 [Nicotiana sylvestri690006805 (4)
JMFF010K03Sequence611009168 (5)ref|XP_009802962.1|3e-48PREDICTED: R3H domain-containing protein 2-like isoform X1 [Nicotiana sylvestri688006805 (4)
JMSF002P05Sequence276009168 (5)750006805 (4)emb|CDO99895.1|1e-19unnamed protein product [Coffea canephora]
JMSF008H11Sequence285009168 (5)ref|XP_010312532.1|49.7PREDICTED: R3H domain-containing protein 2-like [Solanum lycopersicum]652006805 (4)

Alignment

This contig is upended


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rJMSF002P05+                                           GTTATGTTCCAACGGAGACCATGATTC
                      ____________________________________________________________
consensus                                              GTTATGTTCCAACGGAGACCATGATTC
 
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rJMSF002P05+          CTCCATTTGGTCCCAATCATGTTGTCATGCATTCAAACTCTGCTTTATACTTGCACTCAG
                      ____________________________________________________________
consensus             CTCCATTTGGTCCCAATCATGTTGTCATGCATTCAAACTCTGCTTTATACTTGCACTCAG
 
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rJMSF002P05+          CTCAGTATCCACGCCAGCACCCTGGAATGCCCTTCATCCATCATCATGAACAAGTTCAAG
rJMFF004I20+                        CAGCNCCCTGGAATGCCCTTCATCCATCATCATGAACAAGTTCAAG
rJMSF008H11+                                                CATCATCATGAACAAGTTCAAG
rJMFF010K03+                                                CATCATCATGAACAAGTTCAAG
                      ____________________________________________________________
consensus             CTCAGTATCCACGCCAGCACCCTGGAATGCCCTTCATCCATCATCATGAACAAGTTCAAG
 
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rJMSF002P05+          GTCACCCATCCTTTTCACAGTCTCATCAGCAGCTTCTGGAGCGAAGTTTTGGATTGGCCC
rJMFF004I20+          GTCACCCATCCTTTTCACAGTCTCATCAGCAGCTTNTGGAGNGAAGTTTTGGATTGGCCC
rJMSF008H11+          GTCNCCCATCCTTTTCACAGTNTCATCAGCAGCTTNTGGAGCGAAGNTTTGGAATGGNCC
rJMFF010K03+          GTCACCCATCCTTTTCACAGTNTCATCAGCAGCTTNTGGAGCGAAGTTTTGGATTGGCCC
                      ____________________________________________________________
consensus             GTCACCCATCCTTTTCACAGTCTCATCAGCAGCTTCTGGAGCGAAGTTTTGGATTGGCCC
 
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rJMSF002P05+          GGCCCCAATAAGGGGCGTAGGCCATGCCTGCATCCTGCCATATTTCGA-GTAGCTGGTAG
rJMFF004I20+          GGCCCCAATAAGGGGCGTAGGCCATGCCTGCATCCTGCCATATTTCGAGGGAGCTGGTAG
rJMSF008H11+          GGCCCCNATAAGGGGCGTNGGCCNTGCCTGCATCCTNCCATATTTCGAGGGAGCTGGTAG
rJMFF010K03+          GGCCCCAATAAGGGGCGTAGGCCATGCCTGCATCCTGCCATATTTCGAGGGAGCTGGTAG
                      ____________________________________________________________
consensus             GGCCCCAATAAGGGGCGTAGGCCATGCCTGCATCCTGCCATATTTCGAGGGAGCTGGTAG
 
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rJMSF002P05+          TGGAGCAGCACGTTAATTGCAAATTTGCAATTCGCAGGATGTAGGCATATGCAGCCGAGG
rJMFF004I20+          TGGAGCAGCACGTTAATTGCAAATTTGCAATTCGCAGGATGTAGGCATATGCAGCCGAGG
rJMSF008H11+          TGGAGCAGCNCGTTAATTGCAAATTTGCAATTNGCNGGATGTAGGCATATGCAGCCGAGG
rJMFF010K03+          TGGAGCAGCACGTTAATTGCAAATTTGCAATTCGCAGGATGTAGGCATATGCAGCCGAGG
                      ____________________________________________________________
consensus             TGGAGCAGCACGTTAATTGCAAATTTGCAATTCGCAGGATGTAGGCATATGCAGCCGAGG
 
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rJMSF002P05+          GCTTGTTGGACTGGATACGCAAACTTTGCAACTATTCTCTTCTGTCCACTCTTCATGGAC
rJMFF004I20+          GCTTGTTGGACTGGATACGCAAACTTTGCAACTATTCTNTTCTGTCCACTNTTCATGGAC
rJMSF008H11+          GCTTGTTGGACTGGATACGCAAACTTTGCAACTATTCTNTTCTGTCCNCTNTTCATGGNC
rJMFF010K03+          GCTTGTTGGACTGGATACGCAAACTTTGCAACTATTNTNTTCTGTCCACTNTTCATGGAC
                      ____________________________________________________________
consensus             GCTTGTTGGACTGGATACGCAAACTTTGCAACTATTCTCTTCTGTCCACTCTTCATGGAC
 
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rJMSF002P05+          CTTGGCTTTATTGAGCTCCTGAATTTGAGGAAGCTCTTACTTCCTGAGAGTTCCATTGTT
rJMFF004I20+          CTTGGCTTTATTGAGCTCCTGAATTTGAGGAAGCTNTTACTTCCTGAGAGTTCCATTGTT
rJMSF008H11+          CTTGGCTTTATTGAGCTCCTGAATTTGAGGAAGCTNTTACTTCCTGAGAGTTCCNTTGTT
rJMFF010K03+          CTTGGCTTTATTGAGCTCCTGAATTTGAGGAAGCTNTTACTTCCTGAGAGTTCCATTGTT
                      ____________________________________________________________
consensus             CTTGGCTTTATTGAGCTCCTGAATTTGAGGAAGCTCTTACTTCCTGAGAGTTCCATTGTT
 
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rJMSF002P05+          AACAATACTCCTGGAGCCCTGATTGCAATCAATAGAGATGATGATGACAATTGAAGGAAC
rJMFF004I20+          AACAATACTCCTGGAGCCCTGATTGCAATCAATAGAGATGATGATGACAATTGAAGGAAC
rJMSF008H11+          AACAATACTCCTGGAGCCCTGATTGCNATCNATAGAGATGATGATGACAATTGAAGGAAC
rJMFF010K03+          AACAATACTCCTGGAGCCCTGATTGCAATCAATAGAGATGATGATGACAATTGAAGGAAC
                      ____________________________________________________________
consensus             AACAATACTCCTGGAGCCCTGATTGCAATCAATAGAGATGATGATGACAATTGAAGGAAC
 
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rJMSF002P05+          AAGAAGTTAGAGCTGTAAACGCAGGCTTGTTCTTTGTTGGTTGATGTACGTCTGACATGA
rJMFF004I20+          AAGAAGTTAGAGCTGTAAACGCAGGCTTGTTCTTTGTTGGTTGATGTACGTNTGACATGA
rJMSF008H11+          NAGAAGTTAGAGCTGTAAACGCNGGCTTGTTCTTTGTTGGTTGATGTACGTNTGACNTGA
rJMFF010K03+          AAGAAGTTAGAGCTGTAAACGCAGGCTTGTTCTTTGTTGGTTGATGTACGTNTGACATGA
                      ____________________________________________________________
consensus             AAGAAGTTAGAGCTGTAAACGCAGGCTTGTTCTTTGTTGGTTGATGTACGTCTGACATGA
 
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rJMSF002P05+          TGCCTTAAGTTGATAATGCTCCACCAAAGTAAAGCATGGAAGAAATATGCAGTTTGTTGA
rJMFF004I20+          TGCCTTAAGTTGATAATGCTCCACCAAAGTAAAGCATGGAAGAAATATGCAGTTTGTTGA
rJMSF008H11+          TGCCTTAAGTTGATAATGCTCCCCCAAAGTAAAGCNTGGAAGAAATATGCNGTTTGTTGA
rJMFF010K03+          TGCCTTAAGTTGATAATGCTCCACCAAAGTAAAGCATGGAAGAAATATGCAGTTTGTTGA
                      ____________________________________________________________
consensus             TGCCTTAAGTTGATAATGCTCCACCAAAGTAAAGCATGGAAGAAATATGCAGTTTGTTGA
 
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rJMSF002P05+          GGGACATGTGAAAAAGCAGCAGGCAGACAGGTAGAGCTGTGAGAGCTTTAGGGCTCTGCC
rJMFF004I20+          NGGACATGTGAAAAAGCAGCAGGCAGACAGGTAGAGCTGTGAGAGCTTTAGGGCTCTGCC
rJMSF008H11+          GGGACNTGTGAAAAAGCNGCNGGCNGACNGGTAGAGCTGTGAGAGCTTTAGGGCTCTGCC
rJMFF010K03+          GGGACATGTGAAAAAGCAGCAGGCAGACAGGTAGAGCTGTGAGAGCTTTAGGGCTNTGCC
                      ____________________________________________________________
consensus             GGGACATGTGAAAAAGCAGCAGGCAGACAGGTAGAGCTGTGAGAGCTTTAGGGCTCTGCC
 
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rJMSF002P05+          GAGTGATGACTATGATTGTAGG-AAACCCTGGTTGCCTAATGATTTCTCTGTAC      
rJMFF004I20+          GAGTGATGACTATGATTGTAGG-AAACCCTGGTTGCCTAATGATTTCTCTGTACATGAAA
rJMSF008H11+          GNGTGATGACTATGATTGTAGGAAAACCCTGGTTGCCTAATGATTTCTCTGTACNTGAAA
rJMFF010K03+          GAGTGATGACTATGATTGTAGG-AAACCCTGGTTGCCTAATGATTTCTCTGTACATGAAA
                      ____________________________________________________________
consensus             GAGTGATGACTATGATTGTAGG-AAACCCTGGTTGCCTAATGATTTCTCTGTACATGAAA
 
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rJMFF004I20+          TTGAACACATTGAAATATTCATCTATCATTTGCGTCCTC                     
rJMSF008H11+          TTGNACNCNNTGAAATATTCATCTATCATT                              
rJMFF010K03+          TTGAACACATTGAAATATTCATCTATCATTTGCGTCCTCCAATTCCTGTTATCACAAACT
                      ____________________________________________________________
consensus             TTGAACACATTGAAATATTCATCTATCATTTGCGTCCTCCAATTCCTGTTATCACAAACT