Contig 006797:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002F06Sequence586004489 (9)emb|CDP10212.1|5e-40unnamed protein product [Coffea canephora]723006797 (9)ref|XP_004242572.1|2e-70PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMFF005F07Sequence365004489 (9)emb|CDP10212.1|2e-05unnamed protein product [Coffea canephora]711006797 (9)ref|XP_004242572.1|2e-69PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMFF008D17Sequence592004489 (9)emb|CDP10212.1|3e-20unnamed protein product [Coffea canephora]774006797 (9)ref|XP_004242572.1|5e-76PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMFF009J05Sequence592004489 (9)emb|CDP10212.1|3e-20unnamed protein product [Coffea canephora]749006797 (9)ref|XP_004242572.1|2e-71PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMFF010L01Sequence592004489 (9)emb|CDP10212.1|3e-20unnamed protein product [Coffea canephora]675006797 (9)ref|XP_004242572.1|6e-58PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMFF018F24Sequence595004489 (9)emb|CDP10212.1|8e-27unnamed protein product [Coffea canephora]790006797 (9)ref|XP_004242572.1|1e-77PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMSF010H07Sequence409004489 (9)emb|CDP10212.1|1e-09unnamed protein product [Coffea canephora]748006797 (9)ref|XP_004242572.1|3e-76PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMSF021L21Sequence698004489 (9)ref|XP_004242572.1|4e-65PREDICTED: protein RTF2 homolog [Solanum lycopersicum]756006797 (9)ref|XP_004242572.1|1e-77PREDICTED: protein RTF2 homolog [Solanum lycopersicum]
JMSF025L14Sequence667004489 (9)emb|CDP10212.1|9e-41unnamed protein product [Coffea canephora]649006797 (9)ref|XP_009775838.1|2e-51PREDICTED: protein RTF2 homolog [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF021L21+                                                                  TCCC
rJMFF018F24+                                                         TATCAGCTATCCC
                      ____________________________________________________________
consensus                                                            TATCAGCTATCCC
 
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rJMSF021L21+          GGGTATGGAAGACAGTGGCTTGGGTTTCGTGACAAGGTTTCAATGCCCTATCTC-GGGGT
rJMSF010H07+              ATGGAAGACAGTGGCTTGGGTTTCGTGACAAGGTTTCAATGCCCTATCTC-GGGGT
rJMFF005F07+                                                                   GGT
rJMFF018F24+          GGGTATGGAAGACAGTGGCTTGGGTTTCGTGACAAGGTTTCAATGCCNTATCTC-GGGGT
rJMFF009J05+                                      GTGACAAGGTTTCAATGCCCTATCTCGGGGGT
rJMFF002F06+                                                                  GGGT
rJMFF008D17+              ATGGAAGACAGTGGCTTGGGTTTCGTGACAAGGTTTCAATGCCCTATCTC-GGGGT
                      ____________________________________________________________
consensus             GGGTATGGAAGACAGTGGCTTGGGTTTCGTGACAAGGTTTCAATGCCCTATCTC-GGGGT
 
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rJMSF021L21+          TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCCTTGTGGGCATGTCTTCAGTG
rJMSF010H07+          TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCCTTGTGGGCATGTCTTCAGTG
rJMFF005F07+          TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCCTTGTGGGCATGTCTTCAGTG
rJMFF018F24+          TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCCTTGTGGGCATGTCTTCAGTG
rJMFF009J05+          TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCNTTGTGGGCATGTCTTCAGTG
rJMFF002F06+          TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCNTTGTGGGCATGTCTTCAGTG
rJMFF010L01+                                                      GGGCATGTCTTCAGTG
rJMSF025L14+                                                      GGGCATGTCTTCAGTG
rJMFF008D17+          TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCCTTGTGGGCATGTCTTCAGTG
                      ____________________________________________________________
consensus             TAGAGTTTAATGGGAAATATAAGTTCTTTGCACTTAGGCCTTGTGGGCATGTCTTCAGTG
 
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rJMSF021L21+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMSF010H07+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMFF005F07+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMFF018F24+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMFF009J05+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMFF002F06+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMFF010L01+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMSF025L14+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
rJMFF008D17+          CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
                      ____________________________________________________________
consensus             CCAAAGCTTTGAAAGAGGTGAAGTCTTCAGCTTGTTTGGTCTGTCACAAGGAGTTCATGG
 
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rJMSF021L21+          AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
rJMSF010H07+          AGAACGAGAAAATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
rJMFF005F07+          AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
rJMFF018F24+          AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
rJMFF009J05+          AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
rJMFF002F06+          AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
rJMFF010L01+          AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
rJMSF025L14+          AGAACGAGAAGATTGTGATAAATGGGAATGANGACGAGGTNGCAGCATTGAAGGAGAGAA
rJMFF008D17+          AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
                      ____________________________________________________________
consensus             AGAACGAGAAGATTGTGATAAATGGGAATGAAGACGAGGTTGCAGCATTGAAGGAGAGAA
 
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rJMSF021L21+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMSF010H07+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMFF005F07+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMFF018F24+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMFF009J05+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMFF002F06+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMFF010L01+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMSF025L14+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
rJMFF008D17+          TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
                      ____________________________________________________________
consensus             TGGTGGAGGAAAACGCAAAACTTAAGGATAATAAGAAGTCGAAGAAGGGGAAGAATGGTG
 
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rJMSF021L21+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMSF010H07+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMFF005F07+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMFF018F24+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMFF009J05+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMFF002F06+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMFF010L01+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMSF025L14+          GGGANGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
rJMFF008D17+          GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
                      ____________________________________________________________
consensus             GGGATGTAGCTGTGAATGGTGAGGGTGTTGAAGTTACCCGCTTGAGTGGGACAAAACATG
 
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rJMSF021L21+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
rJMSF010H07+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
rJMFF005F07+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
rJMFF018F24+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
rJMFF009J05+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
rJMFF002F06+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
rJMFF010L01+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
rJMSF025L14+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGANCTGAATAGGAAAAATAATC
rJMFF008D17+          GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
                      ____________________________________________________________
consensus             GGATTGAGGATAAGGTTTTTGCAGAGAAAGGGAAATCAGAACTGAATAGGAAAAATAATC
 
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rJMSF021L21+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMSF010H07+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMFF005F07+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMFF018F24+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMFF009J05+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMFF002F06+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMFF010L01+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMSF025L14+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
rJMFF008D17+          CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
                      ____________________________________________________________
consensus             CTAATGGTAAGATCGAAGTGAAGAATGTTACCAATGGTGCAAGTAATGGATCAGGAAAGC
 
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rJMSF021L21+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMSF010H07+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMFF005F07+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMFF018F24+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMFF009J05+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMFF002F06+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMFF010L01+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMSF025L14+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
rJMFF008D17+          GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
                      ____________________________________________________________
consensus             GATTTAAGGCGGGTGAGAATGTACCAGCTAATGCTACCAAGGAGGTTTATGCATCCATTT
 
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rJMSF021L21+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
rJMSF010H07+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
rJMFF005F07+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
rJMFF018F24+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
rJMFF009J05+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
rJMFF002F06+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
rJMFF010L01+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
rJMSF025L14+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATNGCCACTTG
rJMFF008D17+          TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
                      ____________________________________________________________
consensus             TTACATCATCCAGGAAGTCTGATTTCAAGGAGACGTATTCTTGTCGGTCATTGCCACTTG
 
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rJMSF021L21+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMSF010H07+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMFF005F07+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMFF018F24+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMFF009J05+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMFF002F06+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMFF010L01+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMSF025L14+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
rJMFF008D17+          GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
                      ____________________________________________________________
consensus             GAAGAAACTAATGAGTTCTTGGGGTGTATCTCTAAGGTGATCAAGTTGTGTTTCTCATTG
 
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rJMSF021L21+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
rJMSF010H07+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
rJMFF005F07+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
rJMFF018F24+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
rJMFF009J05+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
rJMFF002F06+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
rJMFF010L01+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
rJMSF025L14+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTANTGACAGCCACTTTCCNGTGTAGTGG
rJMFF008D17+          TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
                      ____________________________________________________________
consensus             TTCTTTTGTCATACAAGTATGTGTATGCCCCTTATTGACAGCCACTTT-CTGTGTAGTGG
 
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rJMSF021L21+          TTTTTTGCTTTATGTAAGATTATCATTAGTGATT                          
rJMSF010H07+          TTTTTTGCTTTATGTAAGATTATCATTAG                               
rJMFF005F07+          TTTTTTGCTTTATGTAAGATTATCATTAGTGATTGTATTTGTATTTTAC           
rJMFF018F24+          TTTTTTGCTTTATGTAAGATTATCATTAGTGATTGTATTTGTATTTTACAATGGTTACT 
rJMFF009J05+          TTTTTTGCTTTATGTAAGATTATCATTAGTGATTGTATTTGTATTTTACAATGGTTAC  
rJMFF002F06+          TTTTTTGCTTTATGTAAGATTATCATTAGTGATTGTATTTGTATTTTACAATGGTTACT 
rJMFF010L01+          TTTTTTGCTTTATGTAAGATTATCATTAGTGATTGTATTTGTATTTTACAATGGTTACT 
rJMSF025L14+          TTTTTTGCTCTATGTAAGATTATCATTAGTGAT                           
rJMFF008D17+          TTTTTTGCTTTATGTAAGATTATCATTAGTGATTGTATTTGTATTTTACAATGGTTACTT
                      ____________________________________________________________
consensus             TTTTTTGCTTTATGTAAGATTATCATTAGTGATTGTATTTGTATTTTACAATGGTTACTT