| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005D19 | Sequence | 504 | 005320 (7) | gb|AEX26931.1| | 1e-66 | squalene synthase 1-3 [Solanum tuberosum] | 664 | 006792 (11) | ref|XP_009631700.1| | 6e-92 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMFF006J06 | Sequence | 549 | 005320 (7) | ref|XP_009594336.1| | 1e-88 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 769 | 006792 (11) | ref|XP_009631700.1| | 9e-100 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMFF006P12 | Sequence | 581 | 005320 (7) | ref|XP_009594336.1| | 2e-92 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 800 | 006792 (11) | ref|XP_009631700.1| | 1e-107 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMFF036F03 | Sequence | 606 | 005320 (7) | gb|AAD20626.1| | 7e-111 | squalene synthase [Capsicum annuum] | 590 | 006792 (11) | ref|XP_009631700.1| | 2e-84 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMFF036J16 | Sequence | 546 | 011988 (4) | ref|XP_009594336.1| | 1e-92 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 723 | 006792 (11) | ref|XP_009631700.1| | 1e-89 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMFF040O18 | Sequence | 549 | 011988 (4) | ref|XP_009594336.1| | 1e-92 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 797 | 006792 (11) | ref|XP_009631700.1| | 3e-110 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMSF020A01 | Sequence | 696 | 011988 (4) | gb|AAD20626.1| | 4e-111 | squalene synthase [Capsicum annuum] | 791 | 006792 (11) | ref|XP_009631700.1| | 4e-102 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMSF022L18 | Sequence | 647 | 005320 (7) | ref|XP_009594336.1| | 4e-98 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 790 | 006792 (11) | ref|XP_009631700.1| | 4e-111 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMSF023L18 | Sequence | 753 | 006792 (11) | ref|XP_009631700.1| | 1e-92 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] | |||||
| JMSF046I02 | Sequence | 466 | 005320 (7) | ref|XP_009594336.1| | 2e-66 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 657 | 006792 (11) | ref|XP_009631700.1| | 2e-100 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMSF052J06 | Sequence | 646 | 005320 (7) | gb|AAD20626.1| | 4e-113 | squalene synthase [Capsicum annuum] | 796 | 006792 (11) | ref|XP_009631700.1| | 1e-134 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF052J06+ AAAACTTTTTTCAT
____________________________________________________________
consensus AAAACTTTTTTCAT
. : . : . : . : . : . :
rJMSF052J06+ GCCTCTGGGACAGAGGATTTAGCTTCAGATTCTCTCTCGAATTCTATGGGTCTGTTCCTT
____________________________________________________________
consensus GCCTCTGGGACAGAGGATTTAGCTTCAGATTCTCTCTCGAATTCTATGGGTCTGTTCCTT
. : . : . : . : . : . :
rJMSF052J06+ CAGAAAACAAACATTATTAGGGATTATCTGGAGGATATTAATGAGATACCAAA-GTGTCG
rJMSF022L18+ GAGGATATTAATGAGATACCAAA-GTGTCG
rJMSF020A01+ AGGATATTAATGAGATACCAAAGGGGTCG
rJMFF040O18+ GATATTAATGAGATACCAAA-GTGTCG
rJMFF006P12+ TATTAATGAGATACCAAA-GTGTCG
____________________________________________________________
consensus CAGAAAACAAACATTATTAGGGATTATCTGGAGGATATTAATGAGATACCAAA-GTGTCG
. : . : . : . : . : . :
rJMSF052J06+ GATGTTTTGGCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
rJMSF022L18+ GATGTTTTGGCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
rJMSF046I02+ GGCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
rJMSF020A01+ GATGTTTGGGCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
rJMSF023L18+ CGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
rJMFF005D19+ ATGTTTTGGCCCCGGCAAATTTGGAGTAAATATGTCANCAAACTTGAGGAGTTGAAATA
rJMFF040O18+ GATGTTTTGGCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
rJMFF036J16+ GAGTTGAAATA
rJMFF006P12+ GATGTTTTGNCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
rJMFF006J06+ GGCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
____________________________________________________________
consensus GATGTTTTGGCCCCGGCAAATTTGGAGTAAATATGTCAACAAACTTGAGGAGTTGAAATA
. : . : . : . : . : . :
rJMSF052J06+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMSF022L18+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMSF046I02+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMSF020A01+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMSF023L18+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMFF005D19+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMFF040O18+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMFF036F03+ TGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMFF036J16+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMFF006P12+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
rJMFF006J06+ TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
____________________________________________________________
consensus TGAGGAGAACTCAGTGAATGCAGTACAATGTCTGAATGATATGGTCACAGATGCTTTATC
. : . : . : . : . : . :
rJMSF052J06+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMSF022L18+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMSF046I02+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMSF020A01+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMSF023L18+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMFF005D19+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMFF040O18+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMFF036F03+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMFF036J16+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMFF006P12+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
rJMFF006J06+ ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
____________________________________________________________
consensus ACATGTAGAAGACTGTTTGACTTACATGTCTGCTCTACGAGATCCTTCTATCTTTAGGTT
. : . : . : . : . : . :
rJMSF052J06+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMSF022L18+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMSF046I02+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMSF020A01+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMSF023L18+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMFF005D19+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMFF040O18+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMFF036F03+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMFF036J16+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMFF006P12+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
rJMFF006J06+ CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
____________________________________________________________
consensus CTGCGCTATTCCACAGATCATGGCGATTGGGACATTAGCCATGTGCTACAACAACATTGG
. : . : . : . : . : . :
rJMSF052J06+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMSF022L18+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMSF046I02+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMSF020A01+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMSF023L18+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMFF005D19+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMFF040O18+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMFF036F03+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMFF036J16+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMFF006P12+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
rJMFF006J06+ AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
____________________________________________________________
consensus AGTCTTCAGGGGTGTTGTAAAGATGAGACGTGGTCTTACTGCTAAGGTTATTGACCGGAC
. : . : . : . : . : . :
rJMSF052J06+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMSF022L18+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMSF046I02+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMSF020A01+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMSF023L18+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTNTTCNNGCATNCTAAAATCAAA
rJMFF005D19+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMFF040O18+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMFF036F03+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMFF036J16+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMFF006P12+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
rJMFF006J06+ TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
____________________________________________________________
consensus TAGGACAATGGAAGATGTCTATGGTGGTTTTTTTGATTTTTCTTGCATGCTAAAATCAAA
. : . : . : . : . : . :
rJMSF052J06+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMSF022L18+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMSF046I02+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMSF020A01+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMSF023L18+ GGTTGACCACAATGACCCANCTGCTTCCAAAACTTTGAAGAGGCNTGAAATAATATTAAA
rJMFF005D19+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMFF040O18+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMFF036F03+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMFF036J16+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMFF006P12+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
rJMFF006J06+ GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
____________________________________________________________
consensus GGTTGACCACAATGACCCAACTGCTTCCAAAACTTTGAAGAGGCTTGAAATAATATTAAA
. : . : . : . : . : . :
rJMSF052J06+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMSF022L18+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMSF046I02+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMSF020A01+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMSF023L18+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTNGAGGGCTGNGCC
rJMFF005D19+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMFF040O18+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMFF036F03+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMFF036J16+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMFF006P12+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
rJMFF006J06+ GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
____________________________________________________________
consensus GACTTGTAGGGACTCTGGGACCTTGAACAAGAGGAAATCTTACATTTTGAGGGCTGAGCC
. : . : . : . : . : . :
rJMSF052J06+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMSF022L18+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMSF046I02+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMSF020A01+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMSF023L18+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCANTCTGGCTATTCTTCTTGGATA
rJMFF005D19+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMFF040O18+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMFF036F03+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMFF036J16+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMFF006P12+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
rJMFF006J06+ TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
____________________________________________________________
consensus TAATTATACTCCTGCTCTGATCATTGTCTTCTTTATCATTCTGGCTATTCTTCTTGGATA
. : . : . : . : . : . :
rJMSF052J06+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMSF022L18+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMSF046I02+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMSF020A01+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMSF023L18+ TCTTTCTGGGAACAAACCTCATTCNGTGTGATTGGTTACCATTAGTAGNTAAAAAGAAGT
rJMFF005D19+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMFF040O18+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMFF036F03+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMFF036J16+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMFF006P12+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
rJMFF006J06+ TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
____________________________________________________________
consensus TCTTTCTGGGAACAAACCTCATTCTGTGTGATTGGTTACCATTAGTAGTTAAAAAGAAGT
. : . : . : . : . : . :
rJMSF052J06+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTAT
rJMSF022L18+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
rJMSF046I02+ TTGTCCAAGAAGAAAAACTTAATGACCCACAAACATTGGCTCTCGTCTTTAAGGTATTA-
rJMSF020A01+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
rJMSF023L18+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTNTAAGGTATTAC
rJMFF005D19+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
rJMFF040O18+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
rJMFF036F03+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
rJMFF036J16+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
rJMFF006P12+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
rJMFF006J06+ TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
____________________________________________________________
consensus TTGTCCAAGAAGAAAAACTTAATGACCCAC-AACATTGGCTCTCGTCTTTAAGGTATTA-
. : . : . : . : . : . :
rJMSF052J06+ GA
rJMSF022L18+ -TGATGATGTTGTCTACATATATGCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
rJMSF046I02+ -TGATGA
rJMSF020A01+ -TGATGATGTTGTCTACATATATGCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
rJMSF023L18+ TGACTGATGTTGNCTACATATATNCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
rJMFF005D19+ -TGATGAT
rJMFF040O18+ -TGATGATGTTGTCTACATATATGCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
rJMFF036F03+ -TGATGA
rJMFF036J16+ -TGATGATGTTGTCTACATATATGCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
rJMFF006P12+ -TGATGATGTTGTCTACATATATGCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
rJMFF006J06+ -TGATGATGTTGTCTACATATATGCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
____________________________________________________________
consensus -TGATGATGTTGTCTACATATATGCTTAATGGTGATGTTAGCACTCTATTAATCAACAAC
. : . : . : . : . : . :
rJMSF022L18+ TGTTTGCGATTTGGCTGTCAATTTATTGTCTGTGGGGGAAATGA
rJMSF020A01+ TGTTTGCGATTTGGCTGTCAATTTATNGTCTGTGGGGGAAATGAA
rJMSF023L18+ TGTTTGCGATTNGGCTGTCAATTTATTGTCTGTGGGNGAAATGAAGG
rJMFF040O18+ TGTTTGCGATTTGGCTGTCAATTTATTGTCTGTGGGGGAAATGAAGGTGTATCG
rJMFF036J16+ TGTTTGCGATTTGGCTGTCAATTTATTGTCTGTGGGGGAAATGAAGGTGTATCG
rJMFF006P12+ TGTTTGCGATTTGGCTGTCAATTTATTGTCTGTGGGGGAAATGAAGGTGTATCG
rJMFF006J06+ TGTTTGCGATTTGGCTGTCAATTTATTGTCTGTGGGGGAAATGAAGGTGTATCGGCTTAG
____________________________________________________________
consensus TGTTTGCGATTTGGCTGTCAATTTATTGTCTGTGGGGGAAATGAAGGTGTATCGGCTTAG