Contig 006788:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005J24Sequence261004461 (5)719006788 (3)ref|XP_009602497.1|5e-89PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform
JMSF011P05Sequence223004461 (5)654006788 (3)ref|XP_009795730.1|4e-98PREDICTED: leucine-rich repeat extensin-like protein 4 [Nicotiana sylvestris]
JMSF049K05Sequence223004461 (5)716006788 (3)ref|XP_009602497.1|4e-89PREDICTED: leucine-rich repeat extensin-like protein 6 [Nicotiana tomentosiform

Alignment

This contig is upended


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rJMSF011P05+                                         TCAGAGTTTGGGGAATTCCCCAGCTTCTG
rJMSF049K05+                             GTGGGAANTGCNTCAGAGTTTGGGGAATTCCCCAGCTTNTG
                      ____________________________________________________________
consensus                                GTGGGAANTGCNTCAGAGTTTGGGGAATTCCCCAGCTTCTG
 
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rJMSF011P05+          TCATCAATTTGGCTAACAACAAGTTCTCTGGTAACATTCCCTTCAGTTTAGGCTACATGG
rJMSF049K05+          TCATCAANTTGGCTAACAACAAGTTCTCTGGTAACANTCCCTTCAGNTTAGGCTACATGG
rJMFF005J24+           CATCAATTTGGCTAACAACAAGTTNTNTGGTAACATTCCCTTCAGTTTAGGCTACATGG
                      ____________________________________________________________
consensus             TCATCAATTTGGCTAACAACAAGTTCTCTGGTAACATTCCCTTCAGTTTAGGCTACATGG
 
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rJMSF011P05+          GTCCAAGAATCAAGGAGATTTTGTTCCTGAACAACCAGCTAACAGGTTGTATTCCTGAAG
rJMSF049K05+          GTCCAAGAATCAAGGAGATTTTGTTCCTGAACAACCAGCTAACAGGTTGTATTCCTGAAG
rJMFF005J24+          GTCCAAGAATCAAGGAGATTTTGTTCCTGAACAACCAGCTAACAGGTTGTATTCCTGAAG
                      ____________________________________________________________
consensus             GTCCAAGAATCAAGGAGATTTTGTTCCTGAACAACCAGCTAACAGGTTGTATTCCTGAAG
 
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rJMSF011P05+          GGGTTGGGATGTGGACAGATTTGGAGGTTCTTGATGTGAGTTCAAATTCCTTGATGGGGC
rJMSF049K05+          GGGTTGGGATGTGGACAGATTTGGAGGTTNNTGANGTGAGTTCAAATTCCNTGATGGGGC
rJMFF005J24+          GGGTTGGGATGTGGACAGATTTGGAGGTTCTTGATGTGAGTTCAAATTCCTTGATGGGGC
                      ____________________________________________________________
consensus             GGGTTGGGATGTGGACAGATTTGGAGGTTCTTGATGTGAGTTCAAATTCCTTGATGGGGC
 
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rJMSF011P05+          ATTTGCCAGACTCAATATCCNGTNTGAGTGGGATTGAAGTCCTGAACTTGGCTAACAATA
rJMSF049K05+          ATTTGCCAGACTCAATATCCTGTNTGAGTGGGATTGAAGTCCTGAACTTGGCTAACNATA
rJMFF005J24+          ATTTGCCAGACTCAATATCCTGTNTGAGTGGGATTGAAGTCCTGAACTTGGCTAACAATA
                      ____________________________________________________________
consensus             ATTTGCCAGACTCAATATCCTGTNTGAGTGGGATTGAAGTCCTGAACTTGGCTAACAATA
 
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rJMSF011P05+          AGCTCTNTGGGGAGTTGCCAGACATTGTTTGTTCACTGAAGAGGCTGTTGAATTTGACCA
rJMSF049K05+          AGCTCTNTGGGGAGTTGCCAGACANTGTTTGTTCACTGAAGAGGCTGTTGAATTTGACCA
rJMFF005J24+          AGCTNTTTGGGGAGTTGCCAGACATTGTTTGTTCACTGAAGAGGCTGTTGAATTTGACCA
                      ____________________________________________________________
consensus             AGCTCTTTGGGGAGTTGCCAGACATTGTTTGTTCACTGAAGAGGCTGTTGAATTTGACCA
 
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rJMSF011P05+          TAACTTACAACTTNTTCTNTGGGGTGAGCCAAGACTGTGACAGGCTTCCAACTAGGAATG
rJMSF049K05+          TAACTTACAACTTTTTNTNTGGGGTGAGCCAAGACTGTGACAGGCTTCCAACTAGGAANG
rJMFF005J24+          TAACTTACAACTTTTTNTTTGGGGTGAGCCAAGACTGTGACAGGNTTCCAACTAGGAATG
                      ____________________________________________________________
consensus             TAACTTACAACTTTTTCTTTGGGGTGAGCCAAGACTGTGACAGGCTTCCAACTAGGAATG
 
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rJMSF011P05+          TGGGGTTTGATTTCTCTNTGAATTGCATTCCNGGAAGGGAAATGCAGAGGTCACAACCAG
rJMSF049K05+          TGGGGTTTGATTTCTNTTTGAATTGCNTTCCAGGAAGGGAAATGCNGAGGTCACAACCAG
rJMFF005J24+          TGGGGTTTGATTTNTNTTTGAATTGCATTCCAGGAAGGGAAATGCAGAGGTCACAACCAG
                      ____________________________________________________________
consensus             TGGGGTTTGATTTCTCTTTGAATTGCATTCCAGGAAGGGAAATGCAGAGGTCACAACCAG
 
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rJMSF011P05+          AGTGTTNTGATATCCCNGGAAGCAGTTTGAGTTGCCTTAGAATCCCTTCACCCAAACCTA
rJMSF049K05+          AGTGTTTTGATATCCCNGGAAGCAGTTTGAGTTGCCTTAGAATCCCTTCACCCAAACCTA
rJMFF005J24+          AGTGTTTTGATATCCCAGGAAGCAGTTTGAGTTGCCTTAGAATCCCTTCACCCAAACCTN
                      ____________________________________________________________
consensus             AGTGTTTTGATATCCCAGGAAGCAGTTTGAGTTGCCTTAGAATCCCTTCACCCAAACCTA
 
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rJMSF011P05+          CTGTGTGTGGGGCNTTGATTGGGGGTGAAGGTGAAAAGACCNGTGCGAGTCCTCCTCATT
rJMSF049K05+          CTGTGTGTGGGGCATTGATTGGGGGTGAAGGNGAAAAGACCAGTGCGAGTCCTCCTCATT
rJMFF005J24+          CTGTGTGTGGGGCATTGATTGGGGGTGAAGGTGAAAAGACCAGTGNGAGTCCTCCTCATT
                      ____________________________________________________________
consensus             CTGTGTGTGGGGCATTGATTGGGGGTGAAGGTGAAAAGACCAGTGCGAGTCCTCCTCATT
 
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rJMSF011P05+          GATTTGGTTAGGTGCNCCNTTATGATTGCCNCTTTTTTTTTTGTTTTTTGGTTGGAAAAC
rJMSF049K05+          GATTTGGTTAGGTGCNCCNTTATGATTGCCNCTTTTTTTTTTGTTTTTTGGTTGGAAAAC
rJMFF005J24+          GATTTGGTTAGGTGCACCATTATGATTGCCACTTTTTTTTTTGTTTTTTGGTTGGAAAAC
                      ____________________________________________________________
consensus             GATTTGGTTAGGTGCACCATTATGATTGCCACTTTTTTTTTTGTTTTTTGGTTGGAAAAC
 
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rJMSF011P05+          AACTTAGTATTGGTTGTCTCATT                                     
rJMSF049K05+          AACTTAGTATTGGTTGTCTCATTAACTGGGATTGCGATAATGTATGACTTGTTAATTTGT
rJMFF005J24+          AACTTAGTATTGGTTGTCTCATTAACTGGGATTGCGATAATGTATGACTTGTTAATTTGT
                      ____________________________________________________________
consensus             AACTTAGTATTGGTTGTCTCATTAACTGGGATTGCGATAATGTATGACTTGTTAATTTGT
 
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rJMSF049K05+          CCTCCCTTTTCTATT                                             
rJMFF005J24+          CCTCCCTTTTCTATTTATTTTGAAGTGTACAAGATAATGACTATATATATATTTAGATCT
                      ____________________________________________________________
consensus             CCTCCCTTTTCTATTTATTTTGAAGTGTACAAGATAATGACTATATATATATTTAGATCT