Contig 006785:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005F18Sequence445009287 (3)762006785 (3)ref|XP_009609558.1|1e-63PREDICTED: DUF21 domain-containing protein At4g33700 [Nicotiana tomentosiformis
JMFF013E21Sequence600009287 (3)emb|CDX89630.1|1e-46BnaC03g45440D [Brassica napus]667006785 (3)ref|XP_009609558.1|1e-47PREDICTED: DUF21 domain-containing protein At4g33700 [Nicotiana tomentosiformis
JMSF019I18Sequence493009287 (3)809006785 (3)ref|XP_009773885.1|2e-89PREDICTED: DUF21 domain-containing protein At2g14520 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF019I18+                                         TGCCATGACCCCTATATNTGACACGTTTG
                      ____________________________________________________________
consensus                                            TGCCATGACCCCTATATNTGACACGTTTG
 
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rJMSF019I18+          CNATAGATATTATGCAACACTGAACAGGGGTTTGATGAGTGTGATTTGGAGAAGGGGCAT
                      ____________________________________________________________
consensus             CNATAGATATTATGCAACACTGAACAGGGGTTTGATGAGTGTGATTTGGAGAAGGGGCAT
 
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rJMSF019I18+          AGCAGAATACCAGTCTACTATGAGCAGCCTTCAAACATAATAGGGCTTATTCTGGTCAAA
                      ____________________________________________________________
consensus             AGCAGAATACCAGTCTACTATGAGCAGCCTTCAAACATAATAGGGCTTATTCTGGTCAAA
 
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rJMSF019I18+          AACTTGCTGACTGTCCATCCAGAAGACAACATTCCTGTGAAGAATGTTACTATTCGGAGG
rJMFF005F18+                                           CCTGTGAAGAATGTTACTATTCGGAGG
                      ____________________________________________________________
consensus             AACTTGCTGACTGTCCATCCAGAAGACAACATTCCTGTGAAGAATGTTACTATTCGGAGG
 
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rJMSF019I18+          ATTCCACGGGTCCCGGAAACTATGCCATTAGACGACATCTTGAACGAGTTTCAGAAGGGT
rJMFF013E21+                                                          TTTCAGAAGGGT
rJMFF005F18+          ATTCCACGGGTCCCGGAAACTATGCCATTAGACGACATCTTGAACGAGTTTCAGAAGGGT
                      ____________________________________________________________
consensus             ATTCCACGGGTCCCGGAAACTATGCCATTAGACGACATCTTGAACGAGTTTCAGAAGGGT
 
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rJMSF019I18+          CACAGCCACATGGCTGTGGTCGTACGACAAAGCAACAAGAAGGCAGAACAGACTGCCACC
rJMFF013E21+          CACAGCCACATGGCTGTGGTCGTACGACAAAGCAACAAGAAGGCAGAACAGACTGCCACC
rJMFF005F18+          CACAGCCACATGGCTGTGGTCGTACGACAAAGCAACAAGAAGGCAGAACAGACTGCCACC
                      ____________________________________________________________
consensus             CACAGCCACATGGCTGTGGTCGTACGACAAAGCAACAAGAAGGCAGAACAGACTGCCACC
 
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rJMSF019I18+          GAAGCCTCTCCCAATGACGTGGTACCCGACTTGAAGATAGACATTGATGGCGAAAAGACT
rJMFF013E21+          GAAGCCTCTCCCAATGACGTGGTACCCGACTTGAAGATAGACATTGATGGCGAAAAGACT
rJMFF005F18+          GAAGCCTCTCCCAATGACGTGGTACCCGACTTGAAGATAGACATTGATGGCGAAAAGACT
                      ____________________________________________________________
consensus             GAAGCCTCTCCCAATGACGTGGTACCCGACTTGAAGATAGACATTGATGGCGAAAAGACT
 
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rJMSF019I18+          TCCTTACATAAGGGCCTTAAGAAGGTACGATCACTGCAGAAGGTGAAAAGCTATCCCAAC
rJMFF013E21+          TCCTTACATAAGGGCCTTAAGAAGGTACGATCACTGCAGAAGGTGAAAAGCTATCCCAAC
rJMFF005F18+          TCCTTACATAAGGGCCTTAAGAAGGTACGATCACTGCAGAAGGTGAAAAGCTATCCCAAC
                      ____________________________________________________________
consensus             TCCTTACATAAGGGCCTTAAGAAGGTACGATCACTGCAGAAGGTGAAAAGCTATCCCAAC
 
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rJMSF019I18+          ACCGGAAGCAATTCGTTCAAGGGCTCTAGGAGCAAGAAGTGGAAGGACATGTATGCAGAC
rJMFF013E21+          ACCGGAAGCAATTCGTTCAAGGGCTCTAGGAGCAAGAAGTGGAAGGACATGTATGCAGAC
rJMFF005F18+          ACCGGAAGCAATTCGTTCAAGGGCTCTAGGAGCAAGAAGTGGAAGGACATGTATGCAGAC
                      ____________________________________________________________
consensus             ACCGGAAGCAATTCGTTCAAGGGCTCTAGGAGCAAGAAGTGGAAGGACATGTATGCAGAC
 
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rJMSF019I18+          ATTCTGCCAATGGATGGAAACCCATTGCCAAAACTCCCCGAAGAAGAAGAGGTCGTCGGA
rJMFF013E21+          ATTCTGCCAATGGATGGAAACCCATTGCCAAAACTCCCCGAAGAAGAAGAGGTCGTCGGA
rJMFF005F18+          ATTCTGCCAATGGATGGAAACCCATTGCCAAAACTCCCCGAAGAAGAAGAGGTCGTCGGA
                      ____________________________________________________________
consensus             ATTCTGCCAATGGATGGAAACCCATTGCCAAAACTCCCCGAAGAAGAAGAGGTCGTCGGA
 
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rJMSF019I18+          ATAATAACCATGGAAGACGTTATCGAAGAGCTTTTACAGGAAGAGATCTATGATGAGACA
rJMFF013E21+          ATAATAACCATGGAAGACGTTATCGAAGAGCTTTTACAGGAAGAGATCTATGATGAGACA
rJMFF005F18+          ATAATAACCATGGAAGACGTTATCGAAGAGCTTTTACAGGAAGAGATCTATGATGAGACA
                      ____________________________________________________________
consensus             ATAATAACCATGGAAGACGTTATCGAAGAGCTTTTACAGGAAGAGATCTATGATGAGACA
 
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rJMSF019I18+          GATCATCAGGTGGAAGAATCATGACACGAAGTTATCATCTTATATGAATGCAAGAAATCC
rJMFF013E21+          GATCATCAGGTGGAAGAATCATGACACGAAGTTATCATCTTATATGAATGCAAGAAATCC
rJMFF005F18+          GATCATCAGGTGGAAGAATCATGACACGAAGTTATCATCTTATATGAATGCAAGAAATCC
                      ____________________________________________________________
consensus             GATCATCAGGTGGAAGAATCATGACACGAAGTTATCATCTTATATGAATGCAAGAAATCC
 
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rJMSF019I18+          CAAGAATATATATATGCAAGAAGAGAAATTTTTGAATCTGTAATATAACTATACATTTCT
rJMFF013E21+          CAAGAATATATATATGCAAGAAGAGAAATTTTTGAATCTGTAATATAACTATACATTTCT
rJMFF005F18+          CAAGAATATATATATGCAAGAAGAGAAATTTTTGAATCTGTAATATAACTATACATTTCT
                      ____________________________________________________________
consensus             CAAGAATATATATATGCAAGAAGAGAAATTTTTGAATCTGTAATATAACTATACATTTCT
 
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rJMSF019I18+          GTGGTGGGCTGTAATCAGAATCAATTCCCAGAGATGTAAAACACTATATTTTGGATCAGA
rJMFF013E21+          GTGGTGGGCTGTAATCAGAATCAATTCCCAGAGATGTAAAACACTATATTTTGGATCAGA
rJMFF005F18+          GTGGTGGGCTGTAATCAGAATCAATTCCCAGAGATGTAAAACACTATATTTTGGATCAGA
                      ____________________________________________________________
consensus             GTGGTGGGCTGTAATCAGAATCAATTCCCAGAGATGTAAAACACTATATTTTGGATCAGA
 
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rJMFF013E21+          TAATTTGCTGTATTTTAGTTAAACTATATTCATTTTCTCTCGAATTTCTCCTTTTTGTAA
rJMFF005F18+          TAATTTGCTGTATTTTAGTTAAACTATATTCATTTTCTCTCGAATTTCTCCTTTTTGTAA
                      ____________________________________________________________
consensus             TAATTTGCTGTATTTTAGTTAAACTATATTCATTTTCTCTCGAATTTCTCCTTTTTGTAA
 
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rJMFF013E21+          CTATATATATTAGCATAACCATCATCTTGGATGTGGAAATATATCAATATTTATT     
rJMFF005F18+          CTATATATATTAGCATAACCATCATCTTGGATGTGGAAATATATCAATATTTATTTATTT
                      ____________________________________________________________
consensus             CTATATATATTAGCATAACCATCATCTTGGATGTGGAAATATATCAATATTTATTTATTT