Contig 006778:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004D10Sequence594006598 (3)ref|XP_002313120.1|6e-61Methylcrotonyl-CoA carboxylase beta chain family protein [Populus trichocarpa] 741006778 (3)ref|XP_010107929.1|2e-37Methylcrotonoyl-CoA carboxylase beta chain [Morus notabilis] gb|EXC17329.1| Meth
JMSF033O15Sequence658006598 (3)ref|XP_002313120.1|9e-82Methylcrotonyl-CoA carboxylase beta chain family protein [Populus trichocarpa] 724006778 (3)ref|XP_010107929.1|9e-57Methylcrotonoyl-CoA carboxylase beta chain [Morus notabilis] gb|EXC17329.1| Meth
JMSF035G06Sequence672020044ref|XP_009587677.1|65.9PREDICTED: uncharacterized protein LOC104085370 [Nicotiana tomentosiformis]761006778 (3)ref|XP_009400879.1|4e-23PREDICTED: uncharacterized protein LOC103984999 isoform X2 [Musa acuminata subs

Alignment

This contig is upended


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rJMSF035G06+                GCTTTGCCCTAGACTAAATGATATGACTGCTGTTAGAGTTTGAGGGGTAATCAT
                      ____________________________________________________________
consensus                   GCTTTGCCCTAGACTAAATGATATGACTGCTGTTAGAGTTTGAGGGGTAATCAT
 
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rJMSF035G06+          ACCTGAAATGTGTTCATTGAGAGTGGAGGCTTATTATAATTGGGCTATAGCCATCTCAGA
                      ____________________________________________________________
consensus             ACCTGAAATGTGTTCATTGAGAGTGGAGGCTTATTATAATTGGGCTATAGCCATCTCAGA
 
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rJMSF035G06+          TAGAGCAAAAATGTGGGGTCGTACAAAAGAAGCAGAAGAACTTTGGAAATAGGCAACTAA
                      ____________________________________________________________
consensus             TAGAGCAAAAATGTGGGGTCGTACAAAAGAAGCAGAAGAACTTTGGAAATAGGCAACTAA
 
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rJMSF035G06+          AAACTATGAAAAAGTCGTTCAGCTCAATAGGAACAGTCCTCAGGCACTCAACAACTGGGG
                      ____________________________________________________________
consensus             AAACTATGAAAAAGTCGTTCAGCTCAATAGGAACAGTCCTCAGGCACTCAACAACTGGGG
 
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rJMSF035G06+          ACTGGCTCTAAAGGTATTCGGGATTGTGTAGAATGACACGGAAGTGGGTGAATATACTGA
                      ____________________________________________________________
consensus             ACTGGCTCTAAAGGTATTCGGGATTGTGTAGAATGACACGGAAGTGGGTGAATATACTGA
 
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rJMSF035G06+          AGCAAATAGACGCAAGAGATCCGTTTCGTATTGAAATGACCGATGCCCTTCTCGAAAAGC
                      ____________________________________________________________
consensus             AGCAAATAGACGCAAGAGATCCGTTTCGTATTGAAATGACCGATGCCCTTCTCGAAAAGC
 
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rJMSF035G06+          TGTATAACATGGGTGCGATATCAGAACGGAAAAGTTTAGCTATCAGTGTCATCCTTCTGT
                      ____________________________________________________________
consensus             TGTATAACATGGGTGCGATATCAGAACGGAAAAGTTTAGCTATCAGTGTCATCCTTCTGT
 
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rJMSF035G06+          AGGCTGCCGATGTACTCGCTCAGATAGAAAAGGCCAACAAGAAAAGGCTGGGAATTGAGT
rJMSF033O15+          AGGCTGCCGGTGTACTCTCTCAGATAGAAAAGGCCAACAAGAAAAGGCAGGGAATTGAGT
rJMFF004D10+          AGGCTGCCGGTGTACTCTCTCAGATAGAAAAGGCCAACAAGAAAAGGCAGGGAATTGAGT
                      ____________________________________________________________
consensus             AGGCTGCCGGTGTACTCTCTCAGATAGAAAAGGCCAACAAGAAAAGGCAGGGAATTGAGT
 
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rJMSF035G06+          GGGGAAAGGCAGAAGAGGAAAGTTTCAAGGCAAAAATTGAAGAGAAATATGACAGAGACT
rJMSF033O15+          GGGGAAAGGAAGAAGAGGAAAGTTTCAAGGCAAAAATTGAAGAGAAATATGACAGAG---
rJMFF004D10+          GGGGAAAGGAAGAAGAGGAAAGTTTCAAGGCAAAAATTGAAGAGAAATATGACAGAG---
                      ____________________________________________________________
consensus             GGGGAAAGGAAGAAGAGGAAAGTTTCAAGGCAAAAATTGAAGAGAAATATGACAGAG---
 
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rJMSF035G06+          CAGAGAGGGTGATCCGTATTACTCTACATCAAGACTTTGGGATGACGGTGTAATTGATCC
rJMSF033O15+          -----AGGGTGATCCGTATTACTCTACAGCAAGACTTTGGGATGACGGTGTAATTGATCC
rJMFF004D10+          -----AGGGTGATCCGTATTACTCTACAGCAAGACTTTGGGATGACGGTGTAATTGATCC
                      ____________________________________________________________
consensus             -----AGGGTGATCCGTATTACTCTACAGCAAGACTTTGGGATGACGGTGTAATTGATCC
 
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rJMSF035G06+          AGCCGACACGAG                                                
rJMSF033O15+          AGCAGACACGAGGAAAATCTTAGGCCTCTCCCTCTCTGCATCTATGAACCGGGGTCCACA
rJMFF004D10+          AGCAGACACGAGGAAAATCTTAGGCCTCTCCCTCTCTGCATCTATGAACCGGGGTCCACA
                      ____________________________________________________________
consensus             AGCAGACACGAGGAAAATCTTAGGCCTCTCCCTCTCTGCATCTATGAACCGGGGTCCACA
 
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rJMSF033O15+          GAGTACCAAATATGGTGTGTTTAGAATGTGATCCCCGCACTCCATGCCGAAGCCAGAGAG
rJMFF004D10+          GAGTACCAAATATGGTGTGTTTAGAATGTGATCCCCGCACTCCATGCCGAAGCCAGAGAG
                      ____________________________________________________________
consensus             GAGTACCAAATATGGTGTGTTTAGAATGTGATCCCCGCACTCCATGCCGAAGCCAGAGAG
 
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rJMSF033O15+          TGGCTGCTTAGACTTCTAACTCAATACAAATGAGCAACTGCACTGCATTGCTGGAATAAC
rJMFF004D10+          TGGCTGCTTAGACTTCTAACTCAATACAAATGAGCAACTGCACTGCATTGCTGGAATAAC
                      ____________________________________________________________
consensus             TGGCTGCTTAGACTTCTAACTCAATACAAATGAGCAACTGCACTGCATTGCTGGAATAAC
 
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rJMSF033O15+          TGAACAGAGTTATGATGAGCAGAGTGTGTTGCCATGCTTGTCCCTCACTGCAATAGTGCA
rJMFF004D10+          TGAACAGAGTTATGATGAGCAGAGTGTGTTGCCATGCTTGTCCCTCACTGCAATAGTGCA
                      ____________________________________________________________
consensus             TGAACAGAGTTATGATGAGCAGAGTGTGTTGCCATGCTTGTCCCTCACTGCAATAGTGCA
 
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rJMSF033O15+          TTGTAATAGCAGACTTAGCAGTGCCACCAAATCTATGGCAGAACAAGGACAAGAACAAAC
rJMFF004D10+          TTGTAATAGCAGACTTAGCAGTGCCACCAAATCTATGGCAGAACAAGGACAAGAACAAAC
                      ____________________________________________________________
consensus             TTGTAATAGCAGACTTAGCAGTGCCACCAAATCTATGGCAGAACAAGGACAAGAACAAAC
 
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rJMSF033O15+          TGATTGATGT                                                  
rJMFF004D10+          TGATTGATGTTGGATAACAAATTCCACCATAAACAAAACTGTTTTGCATGCCCATCTTTT
                      ____________________________________________________________
consensus             TGATTGATGTTGGATAACAAATTCCACCATAAACAAAACTGTTTTGCATGCCCATCTTTT
 
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rJMFF004D10+          CAGCCAAGTCTGCTTTGCTAATTGTTTACTCTATTGTAGCAGAGGCTATGGTGTAGTGGT
                      ____________________________________________________________
consensus             CAGCCAAGTCTGCTTTGCTAATTGTTTACTCTATTGTAGCAGAGGCTATGGTGTAGTGGT
 
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rJMFF004D10+          ACTTGAGCAAAATTGTATGATATATGGATATGTTATCATCAATGCCTCAAAGACTTCATC
                      ____________________________________________________________
consensus             ACTTGAGCAAAATTGTATGATATATGGATATGTTATCATCAATGCCTCAAAGACTTCATC
 
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rJMFF004D10+          CAAATAATGATAGGATGTTTGGCAATTGTATGATTACCACTTTAGGCTGAATACTGATAA
                      ____________________________________________________________
consensus             CAAATAATGATAGGATGTTTGGCAATTGTATGATTACCACTTTAGGCTGAATACTGATAA