Contig 006760:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS143F05Sequence641006760 (8)ref|XP_006342010.1|6e-94PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF003F24Sequence388006760 (8)ref|XP_006342009.1|3e-27PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti680004207 (7)ref|XP_011083887.1|4e-73PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF010A03Sequence267006760 (8)ref|XP_009767345.1|1e-17PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti807004207 (7)ref|XP_009767345.1|2e-93PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF010K08Sequence386006760 (8)ref|XP_006342009.1|4e-27PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti766004207 (7)gb|EYU38854.1|1e-89hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF015H19Sequence227006760 (8)ref|XP_009767345.1|1e-11PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti779004207 (7)gb|EYU38854.1|2e-90hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF038F12Sequence643006760 (8)ref|XP_006342010.1|9e-84PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti929004207 (7)gb|EYU38854.1|1e-115hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF050P01Sequence564006760 (8)ref|XP_006342009.1|5e-70PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti797004207 (7)gb|EYU38854.1|5e-90hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF052J20Sequence683006760 (8)ref|XP_006342009.1|9e-90PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti863004207 (7)ref|XP_009767345.1|3e-92PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti

Alignment

This contig is upended


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JMFS143F05+                     TAAGACTAAATCTTGCTTGAATGTCTTAGAAAGACGCTCTTTCAGCAAAC
JMSF052J20+                                                AGAAAGACGCTCTTTCAGCAAAC
                      ____________________________________________________________
consensus                       TAAGACTAAATCTTGCTTGAATGTCTTAGAAAGACGCTCTTTCAGCAAAC
 
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JMFS143F05+           TTTCCCCAATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
JMSF038F12+                  AATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
JMSF052J20+           TTTCCCCAATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
                      ____________________________________________________________
consensus             TTTCCCCAATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
 
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JMFS143F05+           CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
JMSF050P01+                  CTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
JMSF038F12+           CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
JMSF052J20+           CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
                      ____________________________________________________________
consensus             CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
 
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JMFS143F05+           CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
JMSF050P01+           CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
JMSF038F12+           CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
JMSF052J20+           CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
                      ____________________________________________________________
consensus             CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
 
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JMFS143F05+           TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
JMSF050P01+           TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGATTCGAAATGC
JMSF038F12+           TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
JMSF052J20+           TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
                      ____________________________________________________________
consensus             TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
 
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JMFS143F05+           GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF050P01+           GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF038F12+           GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF010K08+                                           AGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF003F24+                                           AGGAAGTGAGNTTCGGCGCCGAGCACTC
JMSF052J20+           GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
                      ____________________________________________________________
consensus             GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
 
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JMFS143F05+           TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF050P01+           TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF038F12+           TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF010K08+           TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF003F24+           TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF052J20+           TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
                      ____________________________________________________________
consensus             TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
 
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JMFS143F05+           TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF050P01+           TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF038F12+           TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF010K08+           TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF003F24+           TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF010A03+                                          GGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF052J20+           TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
                      ____________________________________________________________
consensus             TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
 
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JMFS143F05+           AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGGTAG
JMSF050P01+           AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF038F12+           AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF010K08+           AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF003F24+           AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF010A03+           AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF015H19+                      AGGCGATCGTCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF052J20+           AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
                      ____________________________________________________________
consensus             AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
 
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JMFS143F05+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF050P01+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF038F12+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF010K08+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF003F24+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF010A03+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF015H19+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCNTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF052J20+           CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
                      ____________________________________________________________
consensus             CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
 
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JMFS143F05+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCA         
JMSF050P01+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF038F12+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF010K08+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF003F24+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF010A03+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF015H19+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF052J20+           GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
                      ____________________________________________________________
consensus             GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
 
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JMSF050P01+           GACTGAGCTCACAATTNGAAACCAGACAGT                              
JMSF038F12+           GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGAT           
JMSF010K08+           GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCC  
JMSF003F24+           GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCC  
JMSF010A03+           GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGC     
JMSF015H19+           GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTNTGAGATGATGGTGGCTCC  
JMSF052J20+           GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCCTC
                      ____________________________________________________________
consensus             GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCCTC