Contig 006759:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039A15Sequence422006759 (5)
JMFS061E03Sequence637006759 (5)emb|CDP16208.1|1e-30unnamed protein product [Coffea canephora]
JMSF011E20Sequence288006759 (5)803005632 (3)ref|XP_009786623.1|338PREDICTED: uncharacterized protein LOC104234713 [Nicotiana sylvestris] ref|XP_00
JMSF039O20Sequence670006759 (5)emb|CDP16208.1|5e-37unnamed protein product [Coffea canephora]813005632 (3)ref|XP_009786623.1|366PREDICTED: uncharacterized protein LOC104234713 [Nicotiana sylvestris] ref|XP_00
JMSF052I20Sequence196006759 (5)647005632 (3)ref|XP_009619401.1|315PREDICTED: uncharacterized protein LOC104111412 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF039O20+                                                              GGCGTGAGC
                      ____________________________________________________________
consensus                                                                GGCGTGAGC
 
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JMSF039O20+           AATGCTTTGAGATCAGATTCCTCGAGATAAAAGCTGGATGCTATAGTGTTAGCGTCCGGG
JMFS061E03+                                    GATAAAAGCTGGATGCTATAGTGTTAGCGTCCGGG
                      ____________________________________________________________
consensus             AATGCTTTGAGATCAGATTCCTCGAGATAAAAGCTGGATGCTATAGTGTTAGCGTCCGGG
 
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JMSF039O20+           GGGGTAGTTTCCGGGGAGGATACAAAGGGAACAGATGTTGTCTGCACGGGGAAACCTCGA
JMFS061E03+           GGGGTAGTTTCCGGGGAGGATACAAAGGGAACAGATGTTGTCTGCACGGGGAAACCTCGA
                      ____________________________________________________________
consensus             GGGGTAGTTTCCGGGGAGGATACAAAGGGAACAGATGTTGTCTGCACGGGGAAACCTCGA
 
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JMSF039O20+           AGGCGGATCTCACACACACAGGGAGACGAGAATGCATGGCTCCCTGATTTCGTACCATTT
JMFS061E03+           AGGCGGATCTCACACACACAGGGAGACGAGAATGCATGGCTCCCTGATTTCGTACCATTT
                      ____________________________________________________________
consensus             AGGCGGATCTCACACACACAGGGAGACGAGAATGCATGGCTCCCTGATTTCGTACCATTT
 
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JMFF039A15+                                                                     GA
JMSF039O20+           AAGGCTGTCCCGGGAGTTCTCAATCCCAACGACCCTACTGATAACCTAATGAATGCCTGA
JMFS061E03+           AAGGCTGTCCCGGGAGTTCTCAATCCCAACGACCCTACTGATAACCTAATGAATGCCTGA
                      ____________________________________________________________
consensus             AAGGCTGTCCCGGGAGTTCTCAATCCCAACGACCCTACTGATAACCTAATGAATGCCTGA
 
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JMFF039A15+           GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
JMSF039O20+           GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
JMFS061E03+           GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
                      ____________________________________________________________
consensus             GGATCCATTCCGGTCACAAGTACTCCATGAAGTTTGAGGCGATATATATAGAGTTTGGAC
 
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JMFF039A15+           AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
JMSF039O20+           AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
JMFS061E03+           AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
                      ____________________________________________________________
consensus             AAAACACTTTGATGTCGTAAAAGCCCCTTGTTGGTATCAATTCTTAACTCGACATTCTTG
 
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JMFF039A15+           CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
JMSF039O20+           CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
JMFS061E03+           CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
                      ____________________________________________________________
consensus             CAGAATATCCCTTCAGTTTATATAAACCCGCCCTTGAGTTTCTCACTTCAATACAAAAGT
 
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JMFF039A15+           TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
JMSF039O20+           TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
JMFS061E03+           TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
                      ____________________________________________________________
consensus             TCAACAGAAAAGCGAAAACGGTTGACTGCTTGCATAGACCATGAAGCTTTTCTCTTCCTC
 
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JMFF039A15+           CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
JMSF039O20+           CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
JMFS061E03+           CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
                      ____________________________________________________________
consensus             CAGAGCAAAATCAAACCCAAAGTCACTTTTTGCAGCTTAGACCATCCAAATTTTGCTCCC
 
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JMFF039A15+           ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
JMSF039O20+           ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
JMFS061E03+           ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
JMSF011E20+              GGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
                      ____________________________________________________________
consensus             ACAGGCTTAGAAAAAATGCAAAATCTTCATAGCTTTCTCATCCAGACTTCCCAGAGAAAA
 
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JMFF039A15+           AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMSF039O20+           AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMFS061E03+           AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMSF011E20+           AGANTGAAACTTTACCAATAATCATCCANGTAACCCCAAAACTGCAAATAGGTCTCTCTC
JMSF052I20+                                                          ATAGGTNTCTCTC
                      ____________________________________________________________
consensus             AGATTGAAACTTTACCAATAATCATCCATGTAACCCCAAAACTGCAAATAGGTCTCTCTC
 
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JMSF011E20+           TCTCTCTCTCTTTCTCTCTGTGAATATATATATAGAGAGAGATATATATATATATATATA
JMSF052I20+           TCTCTCTCTCTTTNTCTCTGTGANTATATATATAGAGAGAGANATATATATATATATATA
                      ____________________________________________________________
consensus             TCTCTCTCTCTTTCTCTCTGTGAATATATATATAGAGAGAGATATATATATATATATATA
 
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JMSF011E20+           TATAATTGTGTGTGTGTGCGTGCGTGTCAGTAGGGCCAATGTAAATTCTTGAAGAGTGGA
JMSF052I20+           TATAATNGTGTGTGTGTGCGTGCGTGTCAGTAGGGCCAANGTAAATTCTTGAAGAGTGGA
                      ____________________________________________________________
consensus             TATAATTGTGTGTGTGTGCGTGCGTGTCAGTAGGGCCAATGTAAATTCTTGAAGAGTGGA
 
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JMSF011E20+           TTATATAGGAGCAAGGATGATTGAAGCAGCTAAACAAAACCCATACCCC           
JMSF052I20+           TNATATAGGAGCAAGGATGATTGAAGCAGCTAAACAAAACCCATACCCCAAGAAAATCAT
                      ____________________________________________________________
consensus             TTATATAGGAGCAAGGATGATTGAAGCAGCTAAACAAAACCCATACCCCAAGAAAATCAT