Contig 006754:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026L02Sequence668006754 (3)ref|XP_009625334.1|2e-07PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'748008547 (4)gb|KDO52089.1|3e-52hypothetical protein CISIN_1g0107852mg, partial [Citrus sinensis]
JMSF028D04Sequence695006754 (3)ref|XP_009625334.1|7e-10PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'688008547 (4)gb|KDO52089.1|2e-64hypothetical protein CISIN_1g0107852mg, partial [Citrus sinensis]
JMSF052A13Sequence668006754 (3)ref|XP_009625334.1|2e-09PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'814008547 (4)gb|KDO52089.1|6e-64hypothetical protein CISIN_1g0107852mg, partial [Citrus sinensis]

Alignment

This contig is upended


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JMSF028D04+                                                             ACCCCGCGGT
JMSF052A13+                                                               CCCGCGGT
                      ____________________________________________________________
consensus                                                               ACCCCGCGGT
 
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JMSF028D04+           AGAATNGGAATTGACCCCTGCAAGAGACGTAGCATTCAAACTCCCTGACCGCAAACCTGA
JMSF026L02+                             TGCAAGAGACGTAGCATTCAAACTCCCTGACCGCAAACCTGA
JMSF052A13+           AGAATTGGAATTGACCCCTGCAAGAGACGTAGCATTCAAACTCCCTGACCGCAAACCTGA
                      ____________________________________________________________
consensus             AGAATTGGAATTGACCCCTGCAAGAGACGTAGCATTCAAACTCCCTGACCGCAAACCTGA
 
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JMSF028D04+           CAAGTCACTGCTTCTTGAACTAGAAGAAGCATTAGGAGGAAAAGTAGAGGTTCCCCCATC
JMSF026L02+           CAAGTCACTGCTTCTTGAACTAGAAGAAGCATTAGGAGGAAAAGTAGAGGTTCCCCCATC
JMSF052A13+           CAAGTCACTGCTTCTTGAACTAGAAGAAGCATTAGGAGGAAAAGTAGAGGTTCCCCCATC
                      ____________________________________________________________
consensus             CAAGTCACTGCTTCTTGAACTAGAAGAAGCATTAGGAGGAAAAGTAGAGGTTCCCCCATC
 
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JMSF028D04+           ACGATTGTCAGCTGACTTTGAGGGCTTCCGTGGGAGTCTGTTGAGTATCTGTTTGATCAT
JMSF026L02+           ACGATTGTCAGCTGACTTTGAGGGCTTCCGTGGGAGTCTGTTGAGTATCTGTTTGATCAT
JMSF052A13+           ACGATTGTCAGCTGACTTTGAGGGCTTCCGTGGGAGTCTGTTGAGTATCTGTTTGATCAT
                      ____________________________________________________________
consensus             ACGATTGTCAGCTGACTTTGAGGGCTTCCGTGGGAGTCTGTTGAGTATCTGTTTGATCAT
 
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JMSF028D04+           CACTGGGAACTACAGGATTAAGTTCACTTCAAGTAATCCTAACAGGTATGTTGATTGAAT
JMSF026L02+           CACTGGGAACTACAGGATTAAGTTCACTTCAAGTAATCCTAACAGGTATGTTGATTGAAT
JMSF052A13+           CACTGGGAACTACAGGATTAAGTTCACTTCAAGTAATCCTAACAGGTATGTTGATTGAAT
                      ____________________________________________________________
consensus             CACTGGGAACTACAGGATTAAGTTCACTTCAAGTAATCCTAACAGGTATGTTGATTGAAT
 
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JMSF028D04+           AGCTTACAACAGAGTGCAAACCACAAATGATAATAACATTTGCAGCAACAATCAGGAAAT
JMSF026L02+           AGCTTACAACAGAGTGCAAACCACAAATGATAATAACATTTGCAGCAACAATCAGGAAAT
JMSF052A13+           AGCTTACAACAGAGTGCAAACCACAAATGATAATAACATTTGCAGCAACAATCAGGAAAT
                      ____________________________________________________________
consensus             AGCTTACAACAGAGTGCAAACCACAAATGATAATAACATTTGCAGCAACAATCAGGAAAT
 
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JMSF028D04+           CAACCCAATCAAACCTGCTAACAGCAACCCAGTGAGGATCTAATCACCTCATAGGCTCTC
JMSF026L02+           CAACCCAATCAAACCTGCTAACAGCAACCCAGTGAGGATCTAATCACCTCATAGGCTCTC
JMSF052A13+           CAACCCAATCAAACCTGCTAACAGCAACCCAGTGAGGATCTAATCACCTCATAGGCTCTC
                      ____________________________________________________________
consensus             CAACCCAATCAAACCTGCTAACAGCAACCCAGTGAGGATCTAATCACCTCATAGGCTCTC
 
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JMSF028D04+           TGTGTTCCTGACCAACAGAATCCAACATCCACAGTCTATGAATTCAAGTTCTTGTTCTTC
JMSF026L02+           TGTGTTCCTGACCAACAGAATCCAACATCCACAGTCTATGAATTCAAGTTCTTGTTCTTC
JMSF052A13+           TGTGTTCCTGACCAACAGAATCCAACATCCACAGTCTATGAATTCAAGTTCTTGTTCTTC
                      ____________________________________________________________
consensus             TGTGTTCCTGACCAACAGAATCCAACATCCACAGTCTATGAATTCAAGTTCTTGTTCTTC
 
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JMSF028D04+           TA-TCTAAGTGAAAAAATCCCTTCCTTATCT                             
JMSF026L02+           TACTCTAAGTGAAAAAATCCCTTCCTTATCT                             
JMSF052A13+           TACTCTAAGTGAAAAAATCCCTTCCTTATCTCAGTTCTCTTCAGCTAGATCAAAGGATTA
                      ____________________________________________________________
consensus             TACTCTAAGTGAAAAAATCCCTTCCTTATCTCAGTTCTCTTCAGCTAGATCAAAGGATTA
 
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JMSF052A13+           CAAGATCTGAGGCATGATCTATGAAACCCAGCAAACATTCTTCATCAGAAAACCACAAGG
                      ____________________________________________________________
consensus             CAAGATCTGAGGCATGATCTATGAAACCCAGCAAACATTCTTCATCAGAAAACCACAAGG
 
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JMSF052A13+           AGCTAAAAGACGGTAATGATAAGAAAAGAAAAGTTAAGGATGGAGGCCTCCGAGTTGGGT
                      ____________________________________________________________
consensus             AGCTAAAAGACGGTAATGATAAGAAAAGAAAAGTTAAGGATGGAGGCCTCCGAGTTGGGT
 
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JMSF052A13+           CAGTGATCGAAATCCGAAAACCGGCCAAGAGAGTAGAAAAGCAATCTCTGGTTGTTGTTC
                      ____________________________________________________________
consensus             CAGTGATCGAAATCCGAAAACCGGCCAAGAGAGTAGAAAAGCAATCTCTGGTTGTTGTTC