Contig 006753:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015D03Sequence584006753 (12)ref|XP_009787096.1|5e-105PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]686006753 (12)ref|XP_009787096.1|4e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMFF027D08Sequence535006753 (12)ref|XP_009787096.1|1e-102PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]721006753 (12)ref|XP_009787096.1|4e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMFF036C24Sequence495006753 (12)ref|XP_009787096.1|3e-92PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]683006753 (12)ref|XP_009787096.1|1e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMSF017J08Sequence270006753 (12)ref|XP_009110810.1|2e-42PREDICTED: 60S ribosomal protein L21-1-like [Brassica rapa] emb|CDY31071.1| BnaA653006753 (12)ref|XP_009787096.1|1e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMSF052A09Sequence262006753 (12)emb|CBI29295.3|5e-06unnamed protein product [Vitis vinifera]213006753 (12)ref|XP_004249294.1|3e-06PREDICTED: 60S ribosomal protein L21-1-like [Solanum lycopersicum]
JMSF052H13Sequence632006753 (12)ref|XP_009787096.1|7e-105PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]577006753 (12)ref|XP_009787096.1|4e-105PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF027D08- TCGACCCACA
rJMFF015D03+ AATTCGTCGAGAACCGCTTGACCCCACA
rJMSF017J08+ ACCCACA
JMSF052H13- TCGACCCACA
JMFF015D03- GACCCACA
rJMSF052H13+ TCGACCCACA
JMFF036C24- TCGACCCACA
JMSF017J08- ACCCACA
rJMFF036C24+ TCGACCCACA
rJMFF027D08+ CA
                      ____________________________________________________________
consensus AATTCGTCGAGAACCGCTTCGACCCACA
 
. : . : . : . : . : . :
JMFF027D08- CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMFF015D03+ CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMSF017J08+ CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMSF052H13- CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMFF015D03- CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMSF052H13+ CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMFF036C24- CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
JMSF017J08- CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMFF036C24+ CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
rJMFF027D08+ CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
                      ____________________________________________________________
consensus CTTTACCCAGTCGGAGAAGAAGAAGAAGAGAAAGCAAAATGCCTGCCGGACACGGATTAA
 
. : . : . : . : . : . :
JMFF027D08- GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMFF015D03+ GGGCGAGGACGAGAGATCTCTTCTCTCGCGAGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMSF017J08+ GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMSF052H13- GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMFF015D03- GGGCGAGGACGAGAGATCTCTTCTCTCGCGAGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMSF052H13+ GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMFF036C24- GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
JMSF017J08- GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMFF036C24+ GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
rJMFF027D08+ GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
                      ____________________________________________________________
consensus GGGCGAGGACGAGAGATCTCTTCTCTCGCGGGTTCAGGAAGCGCGGGACCATTCCGCTAT
 
. : . : . : . : . : . :
JMFF027D08- CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMFF015D03+ CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMSF017J08+ CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMSF052H13- CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMFF015D03- CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMSF052H13+ CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMFF036C24- CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
JMSF017J08- CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMFF036C24+ CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
rJMFF027D08+ CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
                      ____________________________________________________________
consensus CCACCTACTTGCGTATCTTCCACATCGGCGACTACGTTGACGTAAAGGTGAACGGTGCCA
 
. : . : . : . : . : . :
JMFF027D08- TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMFF015D03+ TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMSF017J08+ TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMSF052H13- TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMFF015D03- TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMSF052H13+ TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMFF036C24- TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
JMSF017J08- TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMFF036C24+ TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
rJMFF027D08+ TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
                      ____________________________________________________________
consensus TCCACAAGGGCATGCCTCACAAGTTCTATCACGGTCGCACCGGCCGCGTCTGGAACGTCA
 
. : . : . : . : . : . :
JMFF027D08- CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMFF015D03+ CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMSF017J08+ CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMSF052H13- CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMFF015D03- CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMSF052H13+ CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMFF036C24- CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
JMSF017J08- CTAAGCGCGCCATTGGTGTCG
rJMFF036C24+ CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
rJMFF027D08+ CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
                      ____________________________________________________________
consensus CTAAGCGCGCCATTGGTGTCGAAGTCAACAAGCAGGTTGGCAACAGGATCATCAGGAAGA
 
. : . : . : . : . : . :
JMFF027D08- GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMFF015D03+ GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMSF017J08+ GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
JMSF052H13- GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
JMFF015D03- GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMSF052H13+ GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
JMFF036C24- GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMFF036C24+ GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
rJMFF027D08+ GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
                      ____________________________________________________________
consensus GAATCCATGTTCGTATTGAGCATGTTCAACTTTCAAGGTGCACTGAAGAGTTTAAGGAGA
 
. : . : . : . : . : . :
JMFF027D08- GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMFF015D03+ GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMSF017J08+ GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
JMSF052H13- GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
JMFF015D03- GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMSF052H13+ GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
JMFF036C24- GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMFF036C24+ GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
rJMFF027D08+ GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
                      ____________________________________________________________
consensus GGGTAAAGAAAAATGATCAGCTCAAGGCTGAAGCAAAAGCCAAAGGTGTGGTGATTAGTA
 
. : . : . : . : . : . :
JMFF027D08- CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMFF015D03+ CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMSF017J08+ CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMSF052H13- CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMFF015D03- CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMSF052H13+ CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMFF036C24- CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMFF036C24+ CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
rJMSF052A09+ GGAAGGTGCCACTCTAGAAA
rJMFF027D08+ CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
JMSF052A09- GGAAGGTGCCACTCTAGAAA
                      ____________________________________________________________
consensus CTAAGAGGCAGCCGAAAGGACCCAAACCTGGATTTATGGTGGAAGGTGCCACTCTAGAAA
 
. : . : . : . : . : . :
JMFF027D08- CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGG
rJMFF015D03+ CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMSF017J08+ CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMSF052H13- CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMFF015D03- CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMSF052H13+ CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMFF036C24- CC
rJMFF036C24+ CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMSF052A09+ CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
rJMFF027D08+ CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
JMSF052A09- CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
                      ____________________________________________________________
consensus CCGTAACACCCATCCCATATGATGTGGTCAATGATCTCAAGGGAGGATACTAAATTCCTT
 
. : . : . : . : . : . :
rJMFF015D03+ GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
rJMSF017J08+ GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
JMSF052H13- GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
JMFF015D03- GTTTATTCGAGATGTCTTTATCGTTTTATGAAC
rJMSF052H13+ GTTTATTCGAGATGTCTTTATCGTTT
rJMFF036C24+ GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
rJMSF052A09+ GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
rJMFF027D08+ GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
JMSF052A09- GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
                      ____________________________________________________________
consensus GTTTATTCGAGATGTCTTTATCGTTTTATGAACAGTTAATCAGAGTTCTAATTAATGTTG
 
. : . : . : . : . : . :
rJMFF015D03+ TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTT
rJMSF017J08+ TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTT
JMSF052H13- TTTTCATGTCCA
rJMFF036C24+ TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
rJMSF052A09+ TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
rJMFF027D08+ TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
JMSF052A09- TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
                      ____________________________________________________________
consensus TTTTCATGTCCACACACTCGGTTTTGTTTGAATTTTTTTGTGTTGGCCTTTTATATTTGT
 
. : . : . : . : . : . :
rJMFF036C24+ AGTTGAACAT
rJMSF052A09+ AGTTGAACAT
rJMFF027D08+ AGTTGAACATGTTTGCTGAATTTATGTGCCTTTGTGTCAAATTATAGATCA
JMSF052A09- AGTTGAACATGTTTGCTGAATTTATGTGCCTTTGTGTCAAATTATAGATCAAAAAAAAAA
                      ____________________________________________________________
consensus AGTTGAACATGTTTGCTGAATTTATGTGCCTTTGTGTCAAATTATAGATCAAAAAAAAAA