Contig 006750:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011L10Sequence553006750 (2)ref|XP_011086689.1|6e-25PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Sesamum indicum]736001061 (2)ref|XP_004160694.1|8e-85PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigB-like [Cucumis
JMSF051H14Sequence715006750 (2)ref|XP_009761599.1|8e-32PREDICTED: RNA polymerase sigma factor sigB-like [Nicotiana sylvestris]792001061 (2)ref|XP_009408073.1|4e-123PREDICTED: RNA polymerase sigma factor sigB-like [Musa acuminata subsp. malacce

Alignment

This contig is upended


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JMSF051H14+                CAGTGCAGCCTTTGCTAAAGCAACTGCTTCAGATGCAGCTGCGGCTATAACAGCN
                      ____________________________________________________________
consensus                  CAGTGCAGCCTTTGCTAAAGCAACTGCTTCAGATGCAGCTGCGGCTATAACAGCN
 
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JMSF051H14+           TCTTCACTAGTGAGTAGAGTTTCCGCGGGAAAAGCAGTTTTTGAGTTTGCCTCTGTAGGC
                      ____________________________________________________________
consensus             TCTTCACTAGTGAGTAGAGTTTCCGCGGGAAAAGCAGTTTTTGAGTTTGCCTCTGTAGGC
 
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JMFF011L10+               CAACTGCACCAGTGTACGACCACAGTCGATCTGCAGCAACTGAATTTGAGTAATCC
JMSF051H14+           GGGCCAACTGCACCAGTGTACGACCACAGTCGATCTGCAGCAACTGAATTTGAGTAATCC
                      ____________________________________________________________
consensus             GGGCCAACTGCACCAGTGTACGACCACAGTCGATCTGCAGCAACTGAATTTGAGTAATCC
 
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JMFF011L10+           TCAAAAGATGGTAAATTTAACTTCTCCATGTCAAGCATAGAAGTAGTCACCGCTGATGTT
JMSF051H14+           TCAAAAGATGGTAAATTTAACTTCTCCATGTCAAGCATAGAAGTAGTCACCGCTGATGTT
                      ____________________________________________________________
consensus             TCAAAAGATGGTAAATTTAACTTCTCCATGTCAAGCATAGAAGTAGTCACCGCTGATGTT
 
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JMFF011L10+           GGTGGATTCCATGATCGATCTCCATCAATAGAATCTGAGCAAAGATCTAAAGATGGTAAT
JMSF051H14+           GGTGGATTCCATGATCGATCTCCATCAATAGAATCTGAGCAAAGATCTAAAGATGGTAAT
                      ____________________________________________________________
consensus             GGTGGATTCCATGATCGATCTCCATCAATAGAATCTGAGCAAAGATCTAAAGATGGTAAT
 
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JMFF011L10+           TCTAGCTTCTCAATTTCGAGCACAGTCGCTGTTGCTGTTGATGCTGATGGAGATGCAGTT
JMSF051H14+           TCTAGCTTCTCAATTTCGAGCACAGTCGCTGTTGCTGTTGATGCTGATGGAGATGCAGTT
                      ____________________________________________________________
consensus             TCTAGCTTCTCAATTTCGAGCACAGTCGCTGTTGCTGTTGATGCTGATGGAGATGCAGTT
 
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JMFF011L10+           GATAAGATGCATTGCGTCCGAAAATAAACAGGGTGCCTAACCTTAGGGATATGGATGCCG
JMSF051H14+           GATAAGATGCATTGCGTCCGAAAATAAACAGGGTGCCTAACCTTAGGGATATGGATGCCG
                      ____________________________________________________________
consensus             GATAAGATGCATTGCGTCCGAAAATAAACAGGGTGCCTAACCTTAGGGATATGGATGCCG
 
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JMFF011L10+           GATTGGTGGTGGTGGTGGGGAGTTCTTTTGACGGCGAAAGTGTCCGGCGAGCACTTGAAT
JMSF051H14+           GATTGGTGGTGGTGGTGGGGAGTTCTTTTGACGGCGAAAGTGTCCGGCGAGCACTTGAAT
                      ____________________________________________________________
consensus             GATTGGTGGTGGTGGTGGGGAGTTCTTTTGACGGCGAAAGTGTCCGGCGAGCACTTGAAT
 
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JMFF011L10+           TGAGGCAACAAGCAAGACATTTTCCTTCTACAGAATCATATGGACCTTCTTCATATGCAA
JMSF051H14+           TGAGGCAACAAGCAAGACATTTTCCTTCTACAGAATCATATGGACCTTCTTCATATGCAA
                      ____________________________________________________________
consensus             TGAGGCAACAAGCAAGACATTTTCCTTCTACAGAATCATATGGACCTTCTTCATATGCAA
 
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JMFF011L10+           CAAACACTACTCTATCGTTATCATACGGATTAAAGCAGTCAATGAAG-CAAAGCAGCCGC
JMSF051H14+           CAAACACTACTCTATCGTTATCATACGGATTAAAGCAGTCAATGAAGCCAAAGCAGCCGC
                      ____________________________________________________________
consensus             CAAACACTACTCTATCGTTATCATACGGATTAAAGCAGTCAATGAAGCCAAAGCAGCCGC
 
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JMFF011L10+           CTATGAAACGATCAGTAGTCGGAAAGACGCCGGAAACAGCATGTCCCACAGAGAGAGAGA
JMSF051H14+           CTATGAAACGATCAGTAGTCGGAAAGACGCCGGAAACAGCATGTCCCACAGAGAGAGAGA
                      ____________________________________________________________
consensus             CTATGAAACGATCAGTAGTCGGAAAGACGCCGGAAACAGCATGTCCCACAGAGAGAGAGA
 
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JMFF011L10+           AAGAGTGAAGTGTCTGAT                                          
JMSF051H14+           AAGAGTGAAGTGTCTGATACAGAAGATGATAAACCGGATAAGAGACCTTAGCCGGAATGC
                      ____________________________________________________________
consensus             AAGAGTGAAGTGTCTGATACAGAAGATGATAAACCGGATAAGAGACCTTAGCCGGAATGC