Contig 006742:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN012A24Sequence559006742 (3)ref|XP_010063965.1|2e-88PREDICTED: TLC domain-containing protein 2 [Eucalyptus grandis] gb|KCW71259.1| h
JMSF050K16Sequence697006742 (3)ref|XP_011074846.1|5e-110PREDICTED: TLC domain-containing protein 2 [Sesamum indicum]740006742 (3)gb|AFK41510.1|5e-103unknown [Lotus japonicus]

Alignment

This contig is upended


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rJMSF050K16-                 TTATTGATATACAGCATTAATTTGGATATACAGCATGGGTACAAGTTTTAAAC
                      ____________________________________________________________
consensus                    TTATTGATATACAGCATTAATTTGGATATACAGCATGGGTACAAGTTTTAAAC
 
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rJMSF050K16-          ATGCATTAAAGTATAGTATACAGTTATACACAAGTTGGGCAGGCAAATTAAGTTAAAAAT
                      ____________________________________________________________
consensus             ATGCATTAAAGTATAGTATACAGTTATACACAAGTTGGGCAGGCAAATTAAGTTAAAAAT
 
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rJMSF050K16-          TCCTGTAACAAACCGGGCCGTGAGAAGGTGAGGGGTCATTCATGATGATTGTGATTATCT
                      ____________________________________________________________
consensus             TCCTGTAACAAACCGGGCCGTGAGAAGGTGAGGGGTCATTCATGATGATTGTGATTATCT
 
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rJMSF050K16-          GTTTTTTCTTTCCTCTCTCTCCGGTATGCTTCAAATAGATCAATTCCCAAACCAATATTA
                      ____________________________________________________________
consensus             GTTTTTTCTTTCCTCTCTCTCCGGTATGCTTCAAATAGATCAATTCCCAAACCAATATTA
 
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rJMSF050K16-          AGTAAGTTCATACCCGCCATGCCGAAAAGAGCAAGCGGGAGCTCCACGCCCTTGTTAAAC
                      ____________________________________________________________
consensus             AGTAAGTTCATACCCGCCATGCCGAAAAGAGCAAGCGGGAGCTCCACGCCCTTGTTAAAC
 
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rJMSF050K16-          TTGGAAGAATCTTTGAGCAACTTCACAGTGATGAGAATATGAGATGTAAACCTCGCTAAA
JMSF050K16+                                  CACAGTGATGAGAATATGAGATGTAAACCTCGCTAAA
                      ____________________________________________________________
consensus             TTGGAAGAATCTTTGAGCAACTTCACAGTGATGAGAATATGAGATGTAAACCTCGCTAAA
 
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rJMSF050K16-          ACAAACGTTGTCCAGTTAGCACACCATTCCGCCTTTACAATTCTGCTACTGGCATCACGG
JMSF050K16+           ACAAACGTTGTCCAGTTAGCACACCATTCCGCCTTTACAATTCTGCTACTGGCATCACGG
                      ____________________________________________________________
consensus             ACAAACGTTGTCCAGTTAGCACACCATTCCGCCTTTACAATTCTGCTACTGGCATCACGG
 
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rJMSF050K16-          ACACCGGCCATTCGCCGCACTTTGCGTGTATGCAAAAATATGGAATGCAGCTCACAAACA
JMFN012A24+                              CTTTGCGTGTATGCAAAAATATGGAATGCAGCTCACAAACA
JMSF050K16+           ACACCGGCCATTCGCCGCACTTTGCGTGTATGCAAAAATATGGAATGCAGCTCACAAACA
                      ____________________________________________________________
consensus             ACACCGGCCATTCGCCGCACTTTGCGTGTATGCAAAAATATGGAATGCAGCTCACAAACA
 
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rJMSF050K16-          AGAGTGAGAATAAGGTAGTTGATTGTGACATTCCGATACAAAGCCAGGGTAAAGCAAACA
JMFN012A24+           AGAGTGAGAATAAGGTAGTTGATTGTGACATTCCGATACAAAGCCAGGGTAAAGCAAACA
JMSF050K16+           AGAGTGAGAATAAGGTAGTTGATTGTGACATTCCGATACAAAGCCAGGGTAAAGCAAACA
                      ____________________________________________________________
consensus             AGAGTGAGAATAAGGTAGTTGATTGTGACATTCCGATACAAAGCCAGGGTAAAGCAAACA
 
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rJMSF050K16-          AGGAGCACTAGATGATGCACCAGTATTGAAGGAATCCAACCTTTGTATAAATGGTGAAGT
JMFN012A24+           AGGAGCACTAGATGATGCACCAGTATTGAAGGAATCCAACCTTTGTATAAATGGTGAAGT
JMSF050K16+           AGGAGCACTAGATGATGCACCAGTATTGAAGGAATCCAACCTTTGTATAAATGGTGAAGT
                      ____________________________________________________________
consensus             AGGAGCACTAGATGATGCACCAGTATTGAAGGAATCCAACCTTTGTATAAATGGTGAAGT
 
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rJMSF050K16-          AACATATCCCATTGATCATAAGCAAAATACCCACATGAAATGCACAAAGCTGGATATGCC
JMFN012A24+           AACATATCCCATTGATCATAAGCAAAATACCCACATGAAATGCACAAAGCTGGATATGCC
JMSF050K16+           AACATATCCCATTGATCATAAGCAAAATACCCACATGAAATGCACAAAGCTGGATATGCC
                      ____________________________________________________________
consensus             AACATATCCCATTGATCATAAGCAAAATACCCACATGAAATGCACAAAGCTGGATATGCC
 
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rJMSF050K16-          CATGGCCATGAATGCTCAACCAATTCCGAGTGTGCAAACATTGTACTCAAACTGTTTCTC
JMFN012A24+           CATGGCCATGAATGCTCAACCAATTCCGAGTGTGCAAACATTGTACTCAAACTGTTTCTC
JMSF050K16+           CATGGCCATGAATGCTCAACCAATTCCGAGTGTGCAAACATTGTACTCAAACTGTTTCTC
                      ____________________________________________________________
consensus             CATGGCCATGAATGCTCAACCAATTCCGAGTGTGCAAACATTGTACTCAAACTGTTTCTC
 
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rJMSF050K16-          ATCCACTGATTCACTAAAACAAAA                                    
JMFN012A24+           ATCCACTGATTCACTAAAACAAAAACAACTGAGACGGAGGTGATGGATGAGTGAAGAAGA
JMSF050K16+           ATCCACTGATTCACTAAAACAAAAACAACTGAGACGGAGGTGATGGATGAGTGAAGAAGA
                      ____________________________________________________________
consensus             ATCCACTGATTCACTAAAACAAAAACAACTGAGACGGAGGTGATGGATGAGTGAAGAAGA
 
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JMFN012A24+           GACACCGAGGTATTGACAAAGAGAGGGTCCCGATTGAGGCAACTACGGATGACCCAATTG
JMSF050K16+           GACACCGAGGTATTGACAAAGAGAGGGTCCCGATTGAGGCAACTACGGATGACCCAATTG
                      ____________________________________________________________
consensus             GACACCGAGGTATTGACAAAGAGAGGGTCCCGATTGAGGCAACTACGGATGACCCAATTG
 
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JMFN012A24+           GCCGATTGGTAGAAGCAGAAGCCGGCGAGGATAGGTAATAGTTCCGTCCGGTGGATGAAG
JMSF050K16+           GCCGATTGGTAGAAGCAGAAGCCGGCGAGGATAGGTAATAGTTCCGTCCGGTGGATGAAG
                      ____________________________________________________________
consensus             GCCGATTGGTAGAAGCAGAAGCCGGCGAGGATAGGTAATAGTTCCGTCCGGTGGATGAAG
 
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JMFN012A24+           ACAATCTCGTATAGCACAGAAAGGGCCCACATCAACAGCGTCGCCATGAAGAATGCCCCG
JMSF050K16+           ACAATCTCGTATAGCACAGAAAGGGCCCACATCAACAGCGTCGCCATGAAGAATGCCCCG
                      ____________________________________________________________
consensus             ACAATCTCGTATAGCACAGAAAGGGCCCACATCAACAGCGTCGCCATGAAGAATGCCCCG
 
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JMFN012A24+           GACATGGCATTGCGTTCTTCATGAACAACACCGCTACC                      
JMSF050K16+           GACATGGCATTGCGTTCTTCATGAACAACACCGCTACCCCGCCTCGCCTTATCCTCCTCC
                      ____________________________________________________________
consensus             GACATGGCATTGCGTTCTTCATGAACAACACCGCTACCCCGCCTCGCCTTATCCTCCTCC