Contig 006741:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021J02Sequence693006741 (4)ref|XP_004244012.1|6e-39PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum]782002969 (3)ref|XP_009762111.1|3e-103PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref
JMSF044C14Sequence648006741 (4)ref|XP_004244012.1|6e-74PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum]760002969 (3)ref|XP_009762111.1|6e-90PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref
JMSF045L02Sequence760006741 (4)ref|XP_004244012.1|9e-39PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum]161018329
JMSF050J07Sequence692006741 (4)ref|XP_004244012.1|1e-67PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum]758002969 (3)ref|XP_009762111.1|4e-94PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref

Alignment

This contig is upended


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JMSF021J02+                                   ACGGAGAAAAGCATGTTAAGTCATCCTTCCGGCAAA
JMSF045L02+                            TGATCACACGGAGAAAAGCATGTTAAGTCATCC-TCCGGCAAA
                      ____________________________________________________________
consensus                              TGATCACACGGAGAAAAGCATGTTAAGTCATCCTTCCGGCAAA
 
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JMSF021J02+           TGGTTTGAGTTTTGTTGCACGTACACTTTACCAACATGTTTGAGGGTTCTTCCTTGTATT
JMSF045L02+           TGGTTTGAGTTTTGTTGCACGTACACTTTACCAACATGTTTGAGGGTTCTTCCTTGTATT
                      ____________________________________________________________
consensus             TGGTTTGAGTTTTGTTGCACGTACACTTTACCAACATGTTTGAGGGTTCTTCCTTGTATT
 
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JMSF021J02+           TTGTAAGAAAACACTTTCAGAGATTGGCATGACAATGGACTTAGGTCTAAGATGGTATTA
JMSF045L02+           TTGTAAGAAAACACTTTCAGAGATTGGCATGACAATGGACTTAGGTCTAAGATGGTATTA
                      ____________________________________________________________
consensus             TTGTAAGAAAACACTTTCAGAGATTGGCATGACAATGGACTTAGGTCTAAGATGGTATTA
 
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JMSF021J02+           GTGGTACCCTGATCCTGAAACGTTTTGGAGAAGCAATAATACCAGAAAGAGCTGCCAAAG
JMSF045L02+           GTGGTACCCTGATCCTGAAACGTTTTGGAGAAGCAATAATACCAGAAAGAGCTGCCAAAG
                      ____________________________________________________________
consensus             GTGGTACCCTGATCCTGAAACGTTTTGGAGAAGCAATAATACCAGAAAGAGCTGCCAAAG
 
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JMSF021J02+           GCCTAAAGTCTCGTCATGCTTATTGCTCACCTAAAATTGACTGAACTGCAACAAGGTAAG
JMSF044C14+                                        CCTAAAATTGACCGAACTGCATCAAGGTAAG
JMSF045L02+           GCCTAAAGTCTCGTCATGCTTATTGCTCACCTAAAATTGACTGAACTGCAACAAGGTAAG
JMSF050J07+                                        CCTAAAATTGACCGAACTGCATCAAGGTAAG
                      ____________________________________________________________
consensus             GCCTAAAGTCTCGTCATGCTTATTGCTCACCTAAAATTGACTGAACTGCATCAAGGTAAG
 
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JMSF021J02+           AGCCATGGCGGATGGAGCCGCACTCTGGGTCAGTGGATTTGTGGCAGTTGCAGAGAAGTA
JMSF044C14+           AGCCATGGCGGATGG---TGCACTCTGGGTCAGTGGATTTGTAACAGTTGCAGAGAAGAA
JMSF045L02+           AGCCATGGCGGATGGAGCCGCACTCTGGGTCAGTGGATTTGTGGCAGTTGCAGAGAAGTA
JMSF050J07+           AGCCATGGCGGATGG---TGCACTCTGGGTCAGTGGATTTGTAACAGTTGCAGAGAAGAA
                      ____________________________________________________________
consensus             AGCCATGGCGGATGGAGCTGCACTCTGGGTCAGTGGATTTGTGGCAGTTGCAGAGAAGTA
 
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JMSF021J02+           ATGCAGAAGTAAGTGATACACAAGCGAAGCACAGCATGGACAATGGACCCGCAATCCATC
JMSF044C14+           ATGCAGAAATAAGCGTTACAGAAGCAAAACACAGCACGGAAAATGGACCTGCAATCCATC
JMSF045L02+           ATGCAGAAGTAAGTGATACACAAGCGAAGCACAGCATGGACAATGGACCCGCAATCCATC
JMSF050J07+           ATGCAGAAATAAGCGTTACAGAAGCAAAACACAGCACGGAAAATGGACCTGCAATCCATC
                      ____________________________________________________________
consensus             ATGCAGAAGTAAGTGTTACAGAAGCGAAGCACAGCATGGACAATGGACCTGCAATCCATC
 
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JMSF021J02+           CTAGTTGTGCCATGCTCCAAGCTAATGATAGCACACCTGAGCCTATAATTGCTGTGATTA
JMSF044C14+           CTAGTTGTGCTATGCTCCAAGCTAATGATAGCACACCTGAGCCTATCACTGCTGTGATTA
JMSF045L02+           CTAGTTGTGCCATGCTCCAAGCTAATGATAGCACACCTGAGCCTATAATTGCTGTGATTA
JMSF050J07+           CTAGTTGTGCTATGCTCCAAGCTAATGATAGCACACCTGAGCCTATCACTGCTGTGATTA
                      ____________________________________________________________
consensus             CTAGTTGTGCTATGCTCCAAGCTAATGATAGCACACCTGAGCCTATCATTGCTGTGATTA
 
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JMSF021J02+           AATGTGCCAAAGCAGTCCATTCGTTTCCAGTTCTTTTGTGGGGGAGCTTCATAGTTTGAG
JMSF044C14+           TATGTGCCAAAGCAGTCCACTCGTTTCCAGTTCTTTTGAGTGGATCCTTCATAGTTTCAG
JMSF045L02+           AATGTGCCAAAGCAGTCCATTCGTTTCCAGTTCTTTTGTGGGGGAGCTTCATAGTTTGAG
JMSF050J07+           TATGTGCCAAAGCAGTCCACTCGTTTCCAGTTCTTTTGAGTGGATCCTTCATAGTTTCAG
                      ____________________________________________________________
consensus             TATGTGCCAAAGCAGTCCATTCGTTTCCAGTTCTTTTGTGTGGGTGCTTCATAGTTTGAG
 
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JMSF021J02+           TTGGTGGAGTTGACGGCGGCGACGATGATGA                             
JMSF044C14+           TTGGTGGAGTTGATGACGGCGACGATGATGA                             
JMSF045L02+           TTGGTGGAGTTGACGGCGGCGACGATGATGA                             
JMSF050J07+           TTGGTGGAGTTGATGACGGCGACGATGATGAAGGAGAAGAGCGCGTATGCTTCAAGGGCA
                      ____________________________________________________________
consensus             TTGGTGGAGTTGATGGCGGCGACGATGATGAAGGAGAAGAGCGCGTATGCTTCAAGGGCA
 
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JMSF050J07+           TCTTAACACTATCAACCTCTTCATCAAATCCCATGGCCTACGATATCTCTGCCTTTGATG
                      ____________________________________________________________
consensus             TCTTAACACTATCAACCTCTTCATCAAATCCCATGGCCTACGATATCTCTGCCTTTGATG
 
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JMSF050J07+           CACTCTGTGACTCCGTGTTCTAGGCTTTCCCAGAAGCCAGCGAATGCGGACAATTATCCA
                      ____________________________________________________________
consensus             CACTCTGTGACTCCGTGTTCTAGGCTTTCCCAGAAGCCAGCGAATGCGGACAATTATCCA
 
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JMSF050J07+           CCGAGTCTATATTGTTGCCTTATTGGCGCATTTATTTCTTTATTCCGCCATGCCCAACCC
                      ____________________________________________________________
consensus             CCGAGTCTATATTGTTGCCTTATTGGCGCATTTATTTCTTTATTCCGCCATGCCCAACCC