Contig 006740:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029M05Sequence533006740 (4)ref|XP_006363022.1|2e-09PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum]745002617 (4)gb|KDP29900.1|5e-115hypothetical protein JCGZ_18469 [Jatropha curcas]
JMFF031H17Sequence522006740 (4)ref|XP_006363022.1|3e-05PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum]759002617 (4)gb|KDP29900.1|8e-88hypothetical protein JCGZ_18469 [Jatropha curcas]
JMSF047F22Sequence691006740 (4)ref|XP_009761823.1|7e-39PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref|721002617 (4)gb|KDP29900.1|4e-115hypothetical protein JCGZ_18469 [Jatropha curcas]
JMSF050I19Sequence712006740 (4)ref|XP_007215518.1|4e-31hypothetical protein PRUPE_ppa003702mg [Prunus persica] gb|EMJ16717.1| hypotheti777002617 (4)gb|KDP29900.1|6e-114hypothetical protein JCGZ_18469 [Jatropha curcas]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047F22+ CAAATCCCCGACGGGTATGCCTTCCATCATTTC
                      ____________________________________________________________
consensus CAAATCCCCGACGGGTATGCCTTCCATCATTTC
 
. : . : . : . : . : . :
JMSF047F22+ TCTCCAGCTGTCCAATTCTGGTGGGGCGATAGTGCTTGGCAAGGTTAGTTCATAGCACTC
JMSF050I19+ CTC
                      ____________________________________________________________
consensus TCTCCAGCTGTCCAATTCTGGTGGGGCGATAGTGCTTGGCAAGGTTAGTTCATAGCACTC
 
. : . : . : . : . : . :
JMSF047F22+ GGGGACATCTGAGTCAGGTCCAAGCATTACACTCTCGAGTTCCTTTAACTTGTGCCTGAA
JMSF050I19+ GGGGACATNTGAGTCAGGTCCAAGCATTACACTCTCGAGTTCCTTTAACTTGTGCCTGAA
                      ____________________________________________________________
consensus GGGGACATCTGAGTCAGGTCCAAGCATTACACTCTCGAGTTCCTTTAACTTGTGCCTGAA
 
. : . : . : . : . : . :
JMSF047F22+ ATCACTCATGTCATCCGTAACGGAAGACACACTGATTGGAGAACTATACTTGGTTTCTGG
JMSF050I19+ ATCACTCATGTCATCCGTAACGGAAGACACACTGATTGGAGAACTATACTTGGTTTCTGG
                      ____________________________________________________________
consensus ATCACTCATGTCATCCGTAACGGAAGACACACTGATTGGAGAACTATACTTGGTTTCTGG
 
. : . : . : . : . : . :
JMSF047F22+ AGATTGGTGTAGTAGGTCCAACGGGTACGATTGGAATTCTTGTTGCAACATGGGACTTCC
JMFF029M05+ CC
JMSF050I19+ AGATTGGTGTAGTAGGTCCAACGGGTACGATTGGAATTCTTGTTGCAACATGGGACTTCC
                      ____________________________________________________________
consensus AGATTGGTGTAGTAGGTCCAACGGGTACGATTGGAATTCTTGTTGCAACATGGGACTTCC
 
. : . : . : . : . : . :
JMSF047F22+ ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
JMFF031H17+ GGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
JMFF029M05+ ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
JMSF050I19+ ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
                      ____________________________________________________________
consensus ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
 
. : . : . : . : . : . :
JMSF047F22+ GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
JMFF031H17+ GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
JMFF029M05+ GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
JMSF050I19+ GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
                      ____________________________________________________________
consensus GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
 
. : . : . : . : . : . :
JMSF047F22+ GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
JMFF031H17+ TTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
JMFF029M05+ GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
JMSF050I19+ GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
                      ____________________________________________________________
consensus GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
 
. : . : . : . : . : . :
JMSF047F22+ AAAGCACAGCGTATTGGACATCCCTGTTCTCC
JMFF031H17+ AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
JMFF029M05+ AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
JMSF050I19+ AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
                      ____________________________________________________________
consensus AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
 
. : . : . : . : . : . :
JMFF031H17+ TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
JMFF029M05+ TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
JMSF050I19+ TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
                      ____________________________________________________________
consensus TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
 
. : . : . : . : . : . :
JMFF031H17+ TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
JMFF029M05+ TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
JMSF050I19+ TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
                      ____________________________________________________________
consensus TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
 
. : . : . : . : . : . :
JMFF031H17+ AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCC-----------A
JMFF029M05+ AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCCACCTTATACCAA
JMSF050I19+ AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCC-----------A
                      ____________________________________________________________
consensus AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCC-----------A
 
. : . : . : . : . : . :
JMFF031H17+ CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
JMFF029M05+ CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
JMSF050I19+ CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
                      ____________________________________________________________
consensus CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
 
. : . : . : . : . : . :
JMFF031H17+ TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGCAGAGCATAGAGCTCCCCT
JMFF029M05+ TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGC
JMSF050I19+ TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGCAGAGCATAGAGCTCCCCTGTC
                      ____________________________________________________________
consensus TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGCAGAGCATAGAGCTCCCCTGTC