Contig 006740:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029M05Sequence533006740 (4)ref|XP_006363022.1|2e-09PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum]745002617 (4)gb|KDP29900.1|5e-115hypothetical protein JCGZ_18469 [Jatropha curcas]
JMFF031H17Sequence522006740 (4)ref|XP_006363022.1|3e-05PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum]759002617 (4)gb|KDP29900.1|8e-88hypothetical protein JCGZ_18469 [Jatropha curcas]
JMSF047F22Sequence691006740 (4)ref|XP_009761823.1|7e-39PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref|721002617 (4)gb|KDP29900.1|4e-115hypothetical protein JCGZ_18469 [Jatropha curcas]
JMSF050I19Sequence712006740 (4)ref|XP_007215518.1|4e-31hypothetical protein PRUPE_ppa003702mg [Prunus persica] gb|EMJ16717.1| hypotheti777002617 (4)gb|KDP29900.1|6e-114hypothetical protein JCGZ_18469 [Jatropha curcas]

Alignment

This contig is upended


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JMSF047F22+                                      CAAATCCCCGACGGGTATGCCTTCCATCATTTC
                      ____________________________________________________________
consensus                                        CAAATCCCCGACGGGTATGCCTTCCATCATTTC
 
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JMSF047F22+           TCTCCAGCTGTCCAATTCTGGTGGGGCGATAGTGCTTGGCAAGGTTAGTTCATAGCACTC
JMSF050I19+                                                                    CTC
                      ____________________________________________________________
consensus             TCTCCAGCTGTCCAATTCTGGTGGGGCGATAGTGCTTGGCAAGGTTAGTTCATAGCACTC
 
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JMSF047F22+           GGGGACATCTGAGTCAGGTCCAAGCATTACACTCTCGAGTTCCTTTAACTTGTGCCTGAA
JMSF050I19+           GGGGACATNTGAGTCAGGTCCAAGCATTACACTCTCGAGTTCCTTTAACTTGTGCCTGAA
                      ____________________________________________________________
consensus             GGGGACATCTGAGTCAGGTCCAAGCATTACACTCTCGAGTTCCTTTAACTTGTGCCTGAA
 
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JMSF047F22+           ATCACTCATGTCATCCGTAACGGAAGACACACTGATTGGAGAACTATACTTGGTTTCTGG
JMSF050I19+           ATCACTCATGTCATCCGTAACGGAAGACACACTGATTGGAGAACTATACTTGGTTTCTGG
                      ____________________________________________________________
consensus             ATCACTCATGTCATCCGTAACGGAAGACACACTGATTGGAGAACTATACTTGGTTTCTGG
 
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JMSF047F22+           AGATTGGTGTAGTAGGTCCAACGGGTACGATTGGAATTCTTGTTGCAACATGGGACTTCC
JMFF029M05+                                                                     CC
JMSF050I19+           AGATTGGTGTAGTAGGTCCAACGGGTACGATTGGAATTCTTGTTGCAACATGGGACTTCC
                      ____________________________________________________________
consensus             AGATTGGTGTAGTAGGTCCAACGGGTACGATTGGAATTCTTGTTGCAACATGGGACTTCC
 
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JMSF047F22+           ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
JMFF031H17+               GGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
JMFF029M05+           ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
JMSF050I19+           ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
                      ____________________________________________________________
consensus             ATACGGTGAGAAAGTGACGGTTGACGATGAGTTGCAACGAGCATGACTGCCATTTTTCGA
 
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JMSF047F22+           GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
JMFF031H17+           GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
JMFF029M05+           GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
JMSF050I19+           GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
                      ____________________________________________________________
consensus             GGACAATTCCCGATCAGAATAAGCCTGGATCAAGTAGCTGCCCCCGTTGTCACTGCTACT
 
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JMSF047F22+           GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
JMFF031H17+           TTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
JMFF029M05+           GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
JMSF050I19+           GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
                      ____________________________________________________________
consensus             GTGGCTCAGCTGGTCTAAAATTTGAAACTGAGGCACACAGTAGGCCTCGGCCTTTTGCTG
 
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JMSF047F22+           AAAGCACAGCGTATTGGACATCCCTGTTCTCC                            
JMFF031H17+           AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
JMFF029M05+           AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
JMSF050I19+           AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
                      ____________________________________________________________
consensus             AAAGCACAGCGTATTGGACATCCCTGTTCTCCTGAGACGTGATGCTTGCATTTAAAAGGT
 
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JMFF031H17+           TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
JMFF029M05+           TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
JMSF050I19+           TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
                      ____________________________________________________________
consensus             TTCGATACAGATAACTCATACAACTCTGGCCAAGAATTGATGTAATCGAAGGATCTCTAA
 
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JMFF031H17+           TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
JMFF029M05+           TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
JMSF050I19+           TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
                      ____________________________________________________________
consensus             TAGTAGGAAAAGTAGTTTACCAAAAGTAATGCCACGCCATTCTTGGTGATAAACCTCAGC
 
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JMFF031H17+           AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCC-----------A
JMFF029M05+           AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCCACCTTATACCAA
JMSF050I19+           AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCC-----------A
                      ____________________________________________________________
consensus             AAAAAAGATTCCTCTTCTGAAAACCTTGGAAACACCCACCTCACCCCC-----------A
 
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JMFF031H17+           CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
JMFF029M05+           CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
JMSF050I19+           CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
                      ____________________________________________________________
consensus             CCTTAAACTGAAGAATCCCGCGTTATCATAAGATTTCTTTCTTTATTACACTCAAAAGCA
 
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JMFF031H17+           TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGCAGAGCATAGAGCTCCCCT   
JMFF029M05+           TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGC                     
JMSF050I19+           TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGCAGAGCATAGAGCTCCCCTGTC
                      ____________________________________________________________
consensus             TAGCCGAGAACGATAGAGAAGAAGAGAAGAAGAAGAAGCAGAGCATAGAGCTCCCCTGTC