Contig 006732:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS023D04Sequence294006732 (5)ref|XP_009624787.1|3e-08PREDICTED: putative late blight resistance protein homolog R1A-3 [Nicotiana tom
JMFS049E11Sequence610006732 (5)ref|XP_009776048.1|3e-29PREDICTED: putative late blight resistance protein homolog R1A-3 [Nicotiana syl
JMFS154D11Sequence615006732 (5)ref|XP_009776048.1|3e-29PREDICTED: putative late blight resistance protein homolog R1A-3 [Nicotiana syl
JMSF014H10Sequence564006732 (5)ref|XP_011070551.1|1e-18PREDICTED: putative late blight resistance protein homolog R1B-14 [Sesamum indi790012770 (2)ref|XP_009778116.1|2e-31PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana sy
JMSF049G04Sequence683006732 (5)ref|XP_009776048.1|1e-38PREDICTED: putative late blight resistance protein homolog R1A-3 [Nicotiana syl718012770 (2)ref|XP_009778116.1|2e-22PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana sy

Alignment

This contig is upended


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JMSF049G04+                                                AATTNGTAGATAGACATCCCTTT
                      ____________________________________________________________
consensus                                                  AATTNGTAGATAGACATCCCTTT
 
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JMFS049E11+                                                 ATGAAATGATATTCGATTTCCT
JMFS154D11+                                                 ATGAAATGATATTCGATTTCCT
JMSF049G04+           TCTTGTAGAACTGGGAAACATATATCCAAACACGATACATGAAATGATATTCGATTTCCT
                      ____________________________________________________________
consensus             TCTTGTAGAACTGGGAAACATATATCCAAACACGATACATGAAATGATATTCGATTTCCT
 
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JMFS049E11+           CCGACTTGAACACCTTGTTGGCCAATGTGGTTTTTCCAAGGCCAGGCATACCAAAAACTG
JMSF014H10+                                                    CCAGGCATACCAAAAACTG
JMFS154D11+           CCGACTTGAACACCTTGTTGGCCAATGTGGTTTTTCCAAGGCCAGGCATACCAAAAACTG
JMSF049G04+           CCGACTTGAACACCTTGTTGGCCAATGTGGTTTTTCCAAGGCCAGGCATACCAAAAACTG
                      ____________________________________________________________
consensus             CCGACTTGAACACCTTGTTGGCCAATGTGGTTTTTCCAAGGCCAGGCATACCAAAAACTG
 
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JMFS049E11+           AAATAACTCCATAACTGGATCCCTCCCTAAGACGTTGGATAATTATTTTTGCCTCTTCAT
JMSF014H10+           AAATAACTCCATAACTGGATCCCTCCNTAAGACGTTGGATAATTATTTTTGCCTCTTCAT
JMFS154D11+           AAATAACTCCATAACTGGATCCCTCCCTAAGACGTTGGATAATTATTTTTGCCTCTTCAT
JMSF049G04+           AAATAACTCCATAACTGGATCCCTCCCTAAGACGTTGGATAATTATTTTTGCCTCTTCAT
                      ____________________________________________________________
consensus             AAATAACTCCATAACTGGATCCCTCCCTAAGACGTTGGATAATTATTTTTGCCTCTTCAT
 
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JMFS049E11+           CAAACCCTACCACATACTCTTCTTCAACTCTGGGTACCTTCTGCTGCTGCTGCAGCACAG
JMSF014H10+           CAAACCCTACCACATACTCTTCTTCAACTCTGGGTACCTTCTGCTGCTGCTGCAGCACAG
JMFS154D11+           CAAACCCTACCACATACTCTTCTTCAACTCTGGGTACCTTCTGCTGCTGCTGCAGCACAG
JMSF049G04+           CAAACCCTACCACATACTCTTCTTCAACTCTGGGTACCTTCTGCTGCTGCTGCAGCACAG
                      ____________________________________________________________
consensus             CAAACCCTACCACATACTCTTCTTCAACTCTGGGTACCTTCTGCTGCTGCTGCAGCACAG
 
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JMFS049E11+           ACTGGGCAAGTTCTCGGGGCAACACTTTATCTTCGATCACTTTCTGATACTCCTTCTTGT
JMSF014H10+           ACTGGGCAAGTTCTCGGGGCAACACTTTATCTTCGATCACTTTCTGATACTCCTTCTTGT
JMFS154D11+           ACTGGGCAAGTTCTCGGGGCAACACTTTATCTTCGATCACTTTCTGATACTCCTTCTTGT
JMSF049G04+           ACTGGGCAAGTTCTCGGGGCAACACTTTATCTTCGATCACTTTCTGATACTCCTTCTTGT
                      ____________________________________________________________
consensus             ACTGGGCAAGTTCTCGGGGCAACACTTTATCTTCGATCACTTTCTGATACTCCTTCTTGT
 
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JMFS049E11+           CCTGGATTACCTTGATTTCCTCGAGAATTGCTTTGATCTTTCTGGCGACCTCTCTTTTCA
JMSF014H10+           CCTGGATTACCTTGATTTCCTCGAGAATTGCTTTGATCTTTCTGGCGACCTCTCTTTTCA
JMFS154D11+           CCTGGATTACCTTGATTTCCTCGAGAATTGCTTTGATCTTTCTGGCGACCTCTCTTTTCA
JMSF049G04+           CCTGGATTACCTTGATTTCCTCGAGAATTGCTTTGATCTTTCTGGCGACCTCTCTTTTCA
                      ____________________________________________________________
consensus             CCTGGATTACCTTGATTTCCTCGAGAATTGCTTTGATCTTTCTGGCGACCTCTCTTTTCA
 
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JMFS049E11+           AGGGGTAATCGAGGAAACTGGTGAACCTCTCGGCGTGGATCTTGGCGTCGACCACGTATT
JMSF014H10+           AGGGGTAATCGAGGAAACTGGTGAACCTCTCGGCGTGGATCTTGGCGTCGACCACGTATT
JMFS154D11+           AGGGGTAATCGAGGAAACTGGTGAACCTCTCGGCGTGGATCTTGGCGTCGACCACGTATT
JMFS023D04+                                            CGTGGACCTTGGCGTCCACCACGTATT
JMSF049G04+           AGGGGTAATCGAGGAAACTGGTGAACCTCTCGGCGTGGATCTTGGCGTCGACCACGTATT
                      ____________________________________________________________
consensus             AGGGGTAATCGAGGAAACTGGTGAACCTCTCGGCGTGGATCTTGGCGTCGACCACGTATT
 
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JMFS049E11+           GGTCGATGAGGTTTTCGGAGCGGTAGACGACGTCCATGATCTCCTTCTCCAGCTGCTTCA
JMSF014H10+           GGTCGATGAGGTTTTCGGAGCGGTAGACGACGTCCATGATCTCCTTCTCCAGCTGCTTCA
JMFS154D11+           GGTCGATGAGGTTTTCGGAGCGGTAGACGACGTCCATGATCTCCTTCTCCAGCTGCTTCA
JMFS023D04+           GGTCGATGAGGTTTTCCGACCGGTACACGACGTCCATGATGTCCTTCATCAGCTGCTTAA
JMSF049G04+           GGTCGATGAGGTTTTCGGAGCGGTAGACGACGTCCATGATCTCCTTCTCCAGCTGCTTCA
                      ____________________________________________________________
consensus             GGTCGATGAGGTTTTCGGAGCGGTAGACGACGTCCATGATCTCCTTCTCCAGCTGCTTCA
 
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JMFS049E11+           CGATGTCATTTTCCGTCCGGATTTTTCGGGATTCTTTGAGGAAGGACTTGAAGCCATTGA
JMSF014H10+           CGATGCCATTTTCCGTCCGGATTTTTCGGGATTCTTTGAGGAAGGACTTGAAGCCTTTGA
JMFS154D11+           CGATGTCATTTTCCGTCCGGATTTTTCGGGATTCTTTGAGGAAGGACTTGAAGCCATTGA
JMFS023D04+           CGATGTCGTTTTTGGTCCGGATTTTCCGGTACTCTTTCAGGAATGACTTGAAGCCGTTGA
JMSF049G04+           CGATGTCATTTTCCGTCCGGATTTTTCGGGATTCTTTGAGGAAGGACTTGAAGCCATTGA
                      ____________________________________________________________
consensus             CGATGTCATTTTCCGTCCGGATTTTTCGGGATTCTTTGAGGAAGGACTTGAAGCCATTGA
 
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JMFS049E11+           CGAAGCGGAGGAGCTTCTTCACGTCGTCTTCTACGTCGGAGATTAGCTGGAAGTTCTCGT
JMSF014H10+           CGAAGCGGAGGAGCTTCTTCACGTCGTCTTCTACGTCGGAGATTAGCTGGAAGTTCTCGT
JMFS154D11+           CGAAGCGGAGGAGCTTCTTCACGTCGTCTTCTACGTCGGAGATTAGCTGGAAGTTCTCGT
JMFS023D04+           CGTAGCGGAGGAGCTTTTTGACGTCGTCTTTTATGTCGGAGATTAGCTGGAAGTTCTTGT
JMSF049G04+           CGAAGCGGAGGAGCTTCTTCACGTCGTCTTCTACGTCGGAGATTAGCTGGAAGTTCTCGT
                      ____________________________________________________________
consensus             CGAAGCGGAGGAGCTTCTTCACGTCGTCTTCTACGTCGGAGATTAGCTGGAAGTTCTCGT
 
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JMFS049E11+           ACAGTAACTCCGTCAAGTTCTCCACCAACACGTTCACCACTGCCTCCA            
JMSF014H10+           ACAGTAACTCCGTCAAGTTCTCCACCAACACGTTCACCACTGCCTCC             
JMFS154D11+           ACAGTAACTCCGTCAAGTTCTCCACCAACACGTTCACCACTGCCTCCA            
JMFS023D04+           ACAGTAACTCCGTCAAGTTCTCCACCAGCAAGTTCACTACCGCCTCCATT          
JMSF049G04+           ACAGTAACTCCGTCAAGTTCTCCACCAACACGTTCACCACTGCCTCCATTATCTCCCTCC
                      ____________________________________________________________
consensus             ACAGTAACTCCGTCAAGTTCTCCACCAACACGTTCACCACTGCCTCCATTATCTCCCTCC