| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039H02 | Sequence | 522 | 006728 (7) | gb|KJB79238.1| | 5e-47 | hypothetical protein B456_013G038900 [Gossypium raimondii] | 763 | 011178 (8) | dbj|BAF01745.1| | 169 | putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] |
| JMFF045E17 | Sequence | 628 | 006728 (7) | gb|KHG16990.1| | 8e-63 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 582 | 011178 (8) | ref|XP_006385204.1| | 3e-27 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
| JMSF002O12 | Sequence | 245 | 006728 (7) | 760 | 011178 (8) | ref|NP_001182857.1| | 3e-61 | uncharacterized protein LOC100501115 precursor [Zea mays] gb|ACR34922.1| unknown | |||
| JMSF017J01 | Sequence | 436 | 006728 (7) | ref|XP_010930775.1| | 97.8 | PREDICTED: transmembrane 9 superfamily member 1 [Elaeis guineensis] ref|XP_01093 | 754 | 011178 (8) | dbj|BAF01745.1| | 191 | putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] |
| JMSF032K14 | Sequence | 666 | 006728 (7) | gb|KHG16990.1| | 2e-73 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 616 | 011178 (8) | ref|XP_006385204.1| | 2e-45 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
| JMSF046E03 | Sequence | 664 | 006728 (7) | gb|KHG16990.1| | 1e-67 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 642 | 011178 (8) | ref|XP_006385204.1| | 4e-45 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
| JMSF049A20 | Sequence | 702 | 006728 (7) | gb|KHG16990.1| | 3e-68 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 775 | 011178 (8) | ref|XP_006385204.1| | 6e-45 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
This contig is upended
. : . : . : . : . : . :
JMFF045E17+ GAATGATCTGATCTTNATTATATTT
JMSF032K14+ TAAAGGTTTTGGGCTCTCTTGACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
JMSF046E03+ ACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
JMSF049A20+ ACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
____________________________________________________________
consensus TAAAGGTTTTGGGCTCTCTTGACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
. : . : . : . : . : . :
JMFF045E17+ AACTGTTATACTNTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
JMSF032K14+ AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
JMSF046E03+ AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
JMSF049A20+ AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
____________________________________________________________
consensus AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
. : . : . : . : . : . :
JMFF045E17+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMFF039H02+ CAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMSF032K14+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMSF046E03+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMSF049A20+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
____________________________________________________________
consensus CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
. : . : . : . : . : . :
JMFF045E17+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMFF039H02+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMSF032K14+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMSF046E03+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMSF049A20+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
____________________________________________________________
consensus AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
. : . : . : . : . : . :
JMFF045E17+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMFF039H02+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF032K14+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF046E03+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF017J01+ TTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF049A20+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
____________________________________________________________
consensus CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
. : . : . : . : . : . :
JMFF045E17+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMFF039H02+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF032K14+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF046E03+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF017J01+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF049A20+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
____________________________________________________________
consensus TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
. : . : . : . : . : . :
JMFF045E17+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMFF039H02+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF032K14+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF046E03+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF017J01+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF049A20+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
____________________________________________________________
consensus AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
. : . : . : . : . : . :
JMFF045E17+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMFF039H02+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF032K14+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF046E03+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF017J01+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF002O12+ TGATCGGACTCGGAAGCCAACACTGGCGA
JMSF049A20+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
____________________________________________________________
consensus AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
. : . : . : . : . : . :
JMFF045E17+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMFF039H02+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF032K14+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF046E03+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF017J01+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF002O12+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF049A20+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
____________________________________________________________
consensus GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
. : . : . : . : . : . :
JMFF045E17+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMFF039H02+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF032K14+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF046E03+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF017J01+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF002O12+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF049A20+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
____________________________________________________________
consensus CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
. : . : . : . : . : . :
JMFF045E17+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMFF039H02+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF032K14+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF046E03+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF017J01+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF002O12+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF049A20+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
____________________________________________________________
consensus GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
. : . : . : . : . : . :
JMFF045E17+ ACT
JMFF039H02+ ACT
JMSF032K14+ ACTAC
JMSF046E03+ ACTACAGAGATCCGTACTTCCGGC
JMSF017J01+ ACTACAGAGATCCGTACTTCCGGCAAAACGAAG
JMSF002O12+ ACTACAGAGATCCGTACTTCCGGCAAAACGAAG
JMSF049A20+ ACTACAGAGATCCGTACTTCCGGCAAAACGAAGTTCATAAATGCTCTGTGCTTTTTTCCA
____________________________________________________________
consensus ACTACAGAGATCCGTACTTCCGGCAAAACGAAGTTCATAAATGCTCTGTGCTTTTTTCCA