Contig 006725:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF011L17-                                                GGTGCACTCCATATATGATAAA
                      ____________________________________________________________
consensus                                                   GGTGCACTCCATATATGATAAA
 
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rJMSF011L17-          GAAACATGTATCTCAGAGTTTACAACCATCCAAGAAATTGTCAATTCACTCAATCCATAA
rJMSF048G24-                                  ACCATCCAAGAAATTGTCAATTCACTCAATCCATAA
                      ____________________________________________________________
consensus             GAAACATGTATCTCAGAGTTTACAACCATCCAAGAAATTGTCAATTCACTCAATCCATAA
 
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rJMSF011L17-          TCTTGAATCACAACATCTTGAAATAGATACTGGAGTTTGTTCTGTACAATAATAATGACA
rJMSF048G24-          TCTTGAATCACAACATCTTGAAATAGATACTGGAGTTTGTTCTGTACAATAATAATGACA
                      ____________________________________________________________
consensus             TCTTGAATCACAACATCTTGAAATAGATACTGGAGTTTGTTCTGTACAATAATAATGACA
 
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rJMSF011L17-          TGAGGAGCCTTGTGGATCTGATGCTCTTACTACAGATACAATTTAGATGTTCTGTTCTTT
rJMSF048G24-          TGAGGAGCCTTGTGGATCTGATGCTCTTACTACAGATACAATTTAGATGTTCTGTTCTTT
                      ____________________________________________________________
consensus             TGAGGAGCCTTGTGGATCTGATGCTCTTACTACAGATACAATTTAGATGTTCTGTTCTTT
 
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rJMSF011L17-          GTGTTGCACAGTCTGGGGGACTATAGTCTCTCACTCTGAAATGGGAATTGATAAAAATTT
rJMSF048G24-          GTGTTGCACAGTCTGGGGGACTATAGTCTCTCACTCTGAAATGGGAATTGATAAAAATTT
                      ____________________________________________________________
consensus             GTGTTGCACAGTCTGGGGGACTATAGTCTCTCACTCTGAAATGGGAATTGATAAAAATTT
 
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rJMSF011L17-          GATCTTGAATATCATGGTTTCTTCTTTTTCCGGAGTATATACACGTCGGTCTCCTCGTAG
rJMSF048G24-          GATCTTGAATATCATGGTTTCTTCTTTTTCCGGAGTATATACACGTCGGTCTCCTCGTAG
JMSF048G24+                                         CGGAGTATATACACGTCGGTCTCCTCGTAG
                      ____________________________________________________________
consensus             GATCTTGAATATCATGGTTTCTTCTTTTTCCGGAGTATATACACGTCGGTCTCCTCGTAG
 
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rJMSF011L17-          GCATACTCTGGATGCAAATGCTCATGTGGAACTTTGTCGATGTCGAAAACCTCGACGCAG
rJMSF048G24-          GCATACTCTGGATGCAAATGCTCATGTGGAACTTTGTCGATGTCGAAAACCTCGACGCAG
JMSF048G24+           GCATACTCTGGATGCAAATGCTCATGTGGAACTTTGTCGATGTCGAAAACCTCGACGCAG
                      ____________________________________________________________
consensus             GCATACTCTGGATGCAAATGCTCATGTGGAACTTTGTCGATGTCGAAAACCTCGACGCAG
 
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rJMSF011L17-          AGCTCCCAGAACATCTTGTGCGCCTCCGGGGATCTCAGCTGGTAGCCAAGTAAAACCGCG
rJMSF048G24-          AGCTCCCAGAACATCTTGTGCGCCTCCGGGGATCTCAGCTGGTAGCCAAGTAAAACCGCG
JMSF048G24+           AGCTCCCAGAACATCTTGTGCGCCTCCGGGGATCTCAGCTGGTAGCCAAGTAAAACCGCG
                      ____________________________________________________________
consensus             AGCTCCCAGAACATCTTGTGCGCCTCCGGGGATCTCAGCTGGTAGCCAAGTAAAACCGCG
 
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rJMSF011L17-          CCGTCCTCTTTGAGGAGAGATTCCATGGCGGAGATGAGAGGGGCCACCGTCTCCTCCAGG
rJMSF048G24-          CCGTCCTCTTTGAGGAGAGATTCCATGGCGGAGATGAGAGGGGCCACCGTCTCCTCCAGG
JMSF048G24+           CCGTCCTCTTTGAGGAGAGATTCCATGGCGGAGATGAGAGGGGCCACCGTCTCCTCCAGG
                      ____________________________________________________________
consensus             CCGTCCTCTTTGAGGAGAGATTCCATGGCGGAGATGAGAGGGGCCACCGTCTCCTCCAGG
 
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rJMSF011L17-          TAAACCACGTCGGTGGCAATGACAATGTCGAAAGGTTTGCCCAAGGCCCTAATCTGCTCC
rJMSF048G24-          TAAACCACGTCGGTGGCAATGACAATGTCGAAAGGTTTGCCCAAGGCCCTAATCTGCTCC
JMSF048G24+           TAAACCACGTCGGTGGCAATGACAATGTCGAAAGGTTTGCCCAAGGCCCTAATCTGCTCC
                      ____________________________________________________________
consensus             TAAACCACGTCGGTGGCAATGACAATGTCGAAAGGTTTGCCCAAGGCCCTAATCTGCTCC
 
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rJMSF011L17-          TCATTATTCCAATACAACTGAGCCGTTTTCAAGGACTTGTTCAAAACCTGCTTGTTTCGC
rJMSF048G24-          TCATTATTCCAATACAACTGAGCCGTTTTCAAGGACTTGTTCAAAACCTGCTTGTTTCGC
JMSF011L17+                   CCAATACAACTGAGCCGTTTTCAAGGACTTGTTCAAAACCTGCTTGTTTCGC
JMSF048G24+           TCATTATTCCAATACAACTGAGCCGTTTTCAAGGACTTGTTCAAAACCTGCTTGTTTCGC
                      ____________________________________________________________
consensus             TCATTATTCCAATACAACTGAGCCGTTTTCAAGGACTTGTTCAAAACCTGCTTGTTTCGC
 
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rJMSF011L17-          TTCAGGTTGTGCTTTAGGGCCGGCATAACCGGGGCGATGTCGGTGACGAGTACGTCGTTC
rJMSF048G24-          TTCAGGTTGTGCTTTAGGGCCGGCATAACCGGGGCGATGTCGGTGACGAGTACGTCGTTC
JMSF011L17+           TTCAGGTTGTGCTTTAGGGCCGGCATAACCGGGGCGATGTCGGTGACGAGTACGTCGTTC
JMSF048G24+           TTCAGGTTGTGCTTTAGGGCCGGCATAACCGGGGCGATGTCGGTGACGAGTACGTCGTTC
                      ____________________________________________________________
consensus             TTCAGGTTGTGCTTTAGGGCCGGCATAACCGGGGCGATGTCGGTGACGAGTACGTCGTTC
 
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rJMSF011L17-          AGGCCCAACAAGAACAGACCCATG                                    
rJMSF048G24-          AGGCCCAACAAGAACAGACCCATGGCGGCGACTCCGCAGCCGGCTCCGAGCTCTACCCCT
JMSF011L17+           AGGCCCAACAAGAACAGACCCATGGCGGCGACTCCGCAGCCGGCTCCGAGCTCTACCCCT
JMSF048G24+           AGGCCCAACAAGAACAGACCCATGGCGGCGACTCCGCAGCCGGCTCCGAGCTCTACCCCT
                      ____________________________________________________________
consensus             AGGCCCAACAAGAACAGACCCATGGCGGCGACTCCGCAGCCGGCTCCGAGCTCTACCCCT
 
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rJMSF048G24-          CTCTTGTTCTTGAAGTCGA                                         
JMSF011L17+           CTCTTGTTCTTGAAGTCGAGGAGTTCGGCATAGGGGTTTTCAGCGGCAGCGCACGACGGC
JMSF048G24+           CTCTTGTTCTTGAAGTCGAGGAGTTCGGCATAGGGGTTTTCAGCGGCAGCGCACGACGGC
                      ____________________________________________________________
consensus             CTCTTGTTCTTGAAGTCGAGGAGTTCGGCATAGGGGTTTTCAGCGGCAGCGCACGACGGC
 
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JMSF011L17+           GGGTGCCAACGCTCGGCGAATTTGACGGCGACGAGTGAGCAGGGCCAGACGCTAGTCCCC
JMSF048G24+           GGGTGCCAACGCTCGGCGAATTTGACGGCGACGAGTGAGCAGGGCCAGACGCTAGTCCCC
                      ____________________________________________________________
consensus             GGGTGCCAACGCTCGGCGAATTTGACGGCGACGAGTGAGCAGGGCCAGACGCTAGTCCCC
 
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JMSF011L17+           ACATGCATCGAGCCGTTGTCTTGCTGGAAAGACAGCTGCTTATCCAGCACCTTCAGGTCG
JMSF048G24+           ACATGCATCGAGCCGTTGTCTTGCTGGAAAGACAGCTGCTTATCCAGCACCTTCAGGTCG
                      ____________________________________________________________
consensus             ACATGCATCGAGCCGTTGTCTTGCTGGAAAGACAGCTGCTTATCCAGCACCTTCAGGTCG
 
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JMSF011L17+           ATCACCGGCGAATCTGTGAATTTCATCTCTACAACTTCCGGCGACTCTGTGATCT     
JMSF048G24+           ATCACCGGCGAATCTGTGAATTTCATCTCTACAACTTCCGGCGACTCTGTGATCTCGACC
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consensus             ATCACCGGCGAATCTGTGAATTTCATCTCTACAACTTCCGGCGACTCTGTGATCTCGACC