Contig 006724:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF048G14Sequence694006724 (2)ref|XP_011012020.1|231PREDICTED: uncharacterized protein LOC105116386 [Populus euphratica] ref|XP_0110731006724 (2)ref|XP_011012020.1|167PREDICTED: uncharacterized protein LOC105116386 [Populus euphratica] ref|XP_0110

Alignment

This contig is upended


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rJMSF048G14-                                         TGGTATTTCAATATTCCACAACATGGCAG
                      ____________________________________________________________
consensus                                            TGGTATTTCAATATTCCACAACATGGCAG
 
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rJMSF048G14-          CTTTATACAACTTGTAGAATTCTATTTTCNTGTTGAGTTCTAATTTAGTAATTATAAAAG
                      ____________________________________________________________
consensus             CTTTATACAACTTGTAGAATTCTATTTTCNTGTTGAGTTCTAATTTAGTAATTATAAAAG
 
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rJMSF048G14-          AAGAAGAAGAAGGATTCCAAAACCCAACACAATATAAATCACGTAATTCCACCCCCCCTG
                      ____________________________________________________________
consensus             AAGAAGAAGAAGGATTCCAAAACCCAACACAATATAAATCACGTAATTCCACCCCCCCTG
 
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rJMSF048G14-          CAAATATCACTCTCTGCATAACATGAGTTGCATCCATCCATCAGAAGATGCAGCCATGAA
                      ____________________________________________________________
consensus             CAAATATCACTCTCTGCATAACATGAGTTGCATCCATCCATCAGAAGATGCAGCCATGAA
 
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rJMSF048G14-          AAAATGGAGAAATATATATCCCCTTTAATTCCTTCAATCTTCTCTTCTTATTTCCTTACT
                      ____________________________________________________________
consensus             AAAATGGAGAAATATATATCCCCTTTAATTCCTTCAATCTTCTCTTCTTATTTCCTTACT
 
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rJMSF048G14-          CTTCAGAAATTGGGAATGCACAAGAACCATACAGACACAGCTATCTAAATCTCTAGAACA
                      ____________________________________________________________
consensus             CTTCAGAAATTGGGAATGCACAAGAACCATACAGACACAGCTATCTAAATCTCTAGAACA
 
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rJMSF048G14-          ATATATTCTGAATCAGTCTTGTCCCATCTCCCTGAATCACTAGTCCTCTCTCGTTTCNTC
                      ____________________________________________________________
consensus             ATATATTCTGAATCAGTCTTGTCCCATCTCCCTGAATCACTAGTCCTCTCTCGTTTCNTC
 
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rJMSF048G14-          TCCTCTTCTTCTTCTGCTATTGCTGTTGCTGTTGCTGCTGATGTCCGTTTATTTTCCAGG
                      ____________________________________________________________
consensus             TCCTCTTCTTCTTCTGCTATTGCTGTTGCTGTTGCTGCTGATGTCCGTTTATTTTCCAGG
 
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rJMSF048G14-          AATCTCTTTAGTGACGCCGCCCGGGAGGGATTTTGTGGATAAATTTTTTTGGAGAGGATA
                      ____________________________________________________________
consensus             AATCTCTTTAGTGACGCCGCCCGGGAGGGATTTTGTGGATAAATTTTTTTGGAGAGGATA
 
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rJMSF048G14-          GTCCTTAGAAGCTTTTCCATTCTTGATTCTTGAAATGTGTCTCTTAAGCTGGGACTGGGG
JMSF048G14+                                     TTCTTGAAATGTGTCTCTTAAGCTGGGACTGGGG
                      ____________________________________________________________
consensus             GTCCTTAGAAGCTTTTCCATTCTTGATTCTTGAAATGTGTCTCTTAAGCTGGGACTGGGG
 
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rJMSF048G14-          GCAAAACCGCTCCTGCAGACAAACATTTTCTTGACAAGAAAAGAAACAGATTTCTTCCCA
JMSF048G14+           GCAAAACCGCTCCTGCAGACAAACATTTTCTTGACAAGAAAAGAAACAGATTTCTTCCCA
                      ____________________________________________________________
consensus             GCAAAACCGCTCCTGCAGACAAACATTTTCTTGACAAGAAAAGAAACAGATTTCTTCCCA
 
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rJMSF048G14-          ATTGACTTGTGCTGCTTGTTCTTTTCACACACATCTTTGCATCTGCCAATGATGGCTCTG
JMSF048G14+           ATTGACTTGTGCTGCTTGTTCTTTTCACACACATCTTTGCATCTGCCAATGATGGCTCTG
                      ____________________________________________________________
consensus             ATTGACTTGTGCTGCTTGTTCTTTTCACACACATCTTTGCATCTGCCAATGATGGCTCTG
 
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rJMSF048G14-          ATGGTCCTGTCAATCTCATCCTCATCACAATCATATAGCGAA                  
JMSF048G14+           ATGGTCCTGTCAATCTCATCCTCATCACAATCATATAGCGAATTCGCGGCCGACGTGTTT
                      ____________________________________________________________
consensus             ATGGTCCTGTCAATCTCATCCTCATCACAATCATATAGCGAATTCGCGGCCGACGTGTTT
 
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JMSF048G14+           GAAAGCCTCCGATCAACTTTCAGGCTAGAAGGGCAGTTGAGGAACCTATCCAGTGGGAGA
                      ____________________________________________________________
consensus             GAAAGCCTCCGATCAACTTTCAGGCTAGAAGGGCAGTTGAGGAACCTATCCAGTGGGAGA
 
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JMSF048G14+           TCAGCATTGGTTTGTGCTTCGCCTTTCGAGGCCGGTTTTCTTGAAAGGAGCTTAGTCAGA
                      ____________________________________________________________
consensus             TCAGCATTGGTTTGTGCTTCGCCTTTCGAGGCCGGTTTTCTTGAAAGGAGCTTAGTCAGA
 
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JMSF048G14+           GCTTTCTGCAGCTTCCCAACTTCTTCAGGGGTGAACTCTGCTAAATCTGGAGATGAACAT
                      ____________________________________________________________
consensus             GCTTTCTGCAGCTTCCCAACTTCTTCAGGGGTGAACTCTGCTAAATCTGGAGATGAACAT
 
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JMSF048G14+           TGCTCTTCTTCTTCTCCTTCTTCAACAATTATCTCATTTTTCTCTGGTTTTCTTGCGCTT
                      ____________________________________________________________
consensus             TGCTCTTCTTCTTCTCCTTCTTCAACAATTATCTCATTTTTCTCTGGTTTTCTTGCGCTT
 
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JMSF048G14+           TCTGGTGGATCATTATTGCCCAGTGTTCCAATTGCCAGGAAACTGCCAGGCCAGTCGCTG
                      ____________________________________________________________
consensus             TCTGGTGGATCATTATTGCCCAGTGTTCCAATTGCCAGGAAACTGCCAGGCCAGTCGCTG
 
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JMSF048G14+           AATTCTTCGTTTCTGGGCTCTTGTTTTCCGTGATTGGTGGTGGGAGGAGGAACTGGATAT
                      ____________________________________________________________
consensus             AATTCTTCGTTTCTGGGCTCTTGTTTTCCGTGATTGGTGGTGGGAGGAGGAACTGGATAT
 
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JMSF048G14+           CCCTTTCTGCTTCCTGCTTGTCCCCCATTGAACCTGTTTTGCATCCAGTTAAAGAACTTC
                      ____________________________________________________________
consensus             CCCTTTCTGCTTCCTGCTTGTCCCCCATTGAACCTGTTTTGCATCCAGTTAAAGAACTTC
 
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JMSF048G14+           ATTCTATTCTGAAAGATGGAAGCAAAGGTAGAGTAATAGCAGAATGAAGCAGGTAGCTTC
                      ____________________________________________________________
consensus             ATTCTATTCTGAAAGATGGAAGCAAAGGTAGAGTAATAGCAGAATGAAGCAGGTAGCTTC