Contig 006718:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS039F12Sequence604006718 (4)ref|XP_009628940.1|6e-58PREDICTED: RNA-binding protein 25 isoform X3 [Nicotiana tomentosiformis] ref|XP_
JMFS107H08Sequence501006718 (4)ref|XP_010320582.1|1e-06PREDICTED: RNA-binding protein 25 isoform X2 [Solanum lycopersicum]
JMFS148D09Sequence626006718 (4)ref|XP_011087086.1|2e-09PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 25 [Sesamum indicum]
JMSF047L11Sequence642006718 (4)ref|XP_011087086.1|2e-10PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 25 [Sesamum indicum]723002577 (3)ref|XP_006365218.1|7e-80PREDICTED: RNA-binding protein 25-like isoform X5 [Solanum tuberosum]

Alignment

This contig is upended


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JMFS039F12+                         TCATATCTTTATNNTGAGTCTTCTGGGGTGGGCTCTGGGTGTTCTG
                      ____________________________________________________________
consensus                           TCATATCTTTATNNTGAGTCTTCTGGGGTGGGCTCTGGGTGTTCTG
 
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JMFS039F12+           AGGCGGTCTTTGAAGCTTCACTTTTTTCAGCATCTGACACATTTTCTTCCCCTTTGTCAG
                      ____________________________________________________________
consensus             AGGCGGTCTTTGAAGCTTCACTTTTTTCAGCATCTGACACATTTTCTTCCCCTTTGTCAG
 
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JMFS039F12+           CCCCTCCAGTATCCTCCTGATCTTTGGGTTTAGTTGAGCTTTCTATTTTCTTTTTAACAT
                      ____________________________________________________________
consensus             CCCCTCCAGTATCCTCCTGATCTTTGGGTTTAGTTGAGCTTTCTATTTTCTTTTTAACAT
 
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JMFS039F12+           ATTGTTCAAGATATTTCTTAGTTGCTTGATTGACATTCAACATCAATTCTTGCCCATCAA
                      ____________________________________________________________
consensus             ATTGTTCAAGATATTTCTTAGTTGCTTGATTGACATTCAACATCAATTCTTGCCCATCAA
 
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JMFS039F12+           TACTTAATTTGCTAAGCAATCGCAATGCACGAAGAACACCTTCAGCAGACTCAAATTCAC
                      ____________________________________________________________
consensus             TACTTAATTTGCTAAGCAATCGCAATGCACGAAGAACACCTTCAGCAGACTCAAATTCAC
 
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JMFS039F12+           ACAATCCGAAACCTTTTAATGTTCCATTTGTAGGATCTTGAACACGCTTCCAACTTTTTA
                      ____________________________________________________________
consensus             ACAATCCGAAACCTTTTAATGTTCCATTTGTAGGATCTTGAACACGCTTCCAACTTTTTA
 
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JMFS039F12+           CAGGCCCACAGAGCTGCAATAGAGAAAGCATGAAATCATTTTCTACAGTTGGAGATATCT
                      ____________________________________________________________
consensus             CAGGCCCACAGAGCTGCAATAGAGAAAGCATGAAATCATTTTCTACAGTTGGAGATATCT
 
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JMFS039F12+           TGCCAACATAAACTGTTATATGAGTTTTCTCTGTTTGTGTAACAAGTGGAGAGGGAGCCG
                      ____________________________________________________________
consensus             TGCCAACATAAACTGTTATATGAGTTTTCTCTGTTTGTGTAACAAGTGGAGAGGGAGCCG
 
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JMFS039F12+           GCCTAATAACAGGAGGAATGATTGGACCACGAATGACAGGAACTGGCGGGCGCATCAAGG
JMFS148D09+                                               CAGGAACTGGCGGGCGCATCAAGG
                      ____________________________________________________________
consensus             GCCTAATAACAGGAGGAATGATTGGACCACGAATGACAGGAACTGGCGGGCGCATCAAGG
 
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JMFS039F12+           GAGGAACAATGCCTACACCTATCGGTGGGCGAGGAGGGTATATTTGCCGGACCATTGGGT
JMFS107H08+                                                               CATTGGGT
JMFS148D09+           GAGGAACAATGCCTACACCTATCGGTGGGCGAGGAGGGTATATTTGCCGGACCATTGGGT
JMSF047L11+                             CTATCGGTGGGCGAGGAGGGTATATTTGCCGGACCATTGGGT
                      ____________________________________________________________
consensus             GAGGAACAATGCCTACACCTATCGGTGGGCGAGGAGGGTATATTTGCCGGACCATTGGGT
 
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JMFS039F12+           ATGGTGAGGGATAACGAA                                          
JMFS107H08+           ATGGTGAGGCATACCGAAGAATTCCTGGAGGATGGGCGCCACCTTGGTGAAGAGGGTGAG
JMFS148D09+           ATGGTGAGGGATAACGAAGAATTCCTGGAGGATGGGCGCCACCTTGGTGAAGAGGCTGAG
JMSF047L11+           ATGGTGAGGGATAACGAAGAATTCCTGGAGGATGGGCGCCACCTTGGTGAAGAGGCTGAG
                      ____________________________________________________________
consensus             ATGGTGAGGGATAACGAAGAATTCCTGGAGGATGGGCGCCACCTTGGTGAAGAGGCTGAG
 
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JMFS107H08+           GCATGCCTGGATAACCATTCGGTATTGGAGCATAGGGTCTCAATGGCTGCCCTGGCATCG
JMFS148D09+           GCATGCCTGGATAACCATTCGGTATTGGAGCATAGGGTCTCAATGGCTGCCCTGGCATCG
JMSF047L11+           GCATGCCTGGATAACCATTCGGTATTGGAGCATAGGGTCTCAATGGCTGCCCTGGCATCG
                      ____________________________________________________________
consensus             GCATGCCTGGATAACCATTCGGTATTGGAGCATAGGGTCTCAATGGCTGCCCTGGCATCG
 
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JMFS107H08+           CAAAAGTCGGCTGAACATAACCCATCGGAACCCCAGCACCGGCAGCCGGAGCCCCCGGAG
JMFS148D09+           CAAAAGGCGGCTGAACATAACCCATCGGAACCCCAGCACCGGCAGCCGGAGCCCCCGGAG
JMSF047L11+           CAAAAGGCGGCTGAACATAACCCATCGGAACCCCAGCACCGGCAGCCGGAGCCCCCGGAG
                      ____________________________________________________________
consensus             CAAAAGGCGGCTGAACATAACCCATCGGAACCCCAGCACCGGCAGCCGGAGCCCCCGGAG
 
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JMFS107H08+           GAGGTGCAATCATATCCGGCGACACGGAGCTGACTCCAGGGGGCGGAATCCCAGGCGTGG
JMFS148D09+           GAGGTGCAATCATAACCGGCGACACGGAGCTGACTCCAGGGGGCGGAATCCCAGGCGTGG
JMSF047L11+           GAGGTGCAATCATAACCGGCGACACGGAGCTGACTCCAGGGGGCGGAATCCCAGGCGTGG
                      ____________________________________________________________
consensus             GAGGTGCAATCATAACCGGCGACACGGAGCTGACTCCAGGGGGCGGAATCCCAGGCGTGG
 
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JMFS107H08+           TCTGATAGTTCGGAGTTTGCTGCAAGCCAGGGGTAGGGATAGGCGAGAATTGAGGAGCAG
JMFS148D09+           TCTGATAGTTCGGAGTTTGCTGCAAGCCAGGGGTAGGGATAGGCGAGAATTGAGGAGCAG
JMSF047L11+           TCTGATAGTTCGGAGTTTGCTGCAAGCCAGGGGTAGGGATAGGCGAGAATTGAGGAGCAG
                      ____________________________________________________________
consensus             TCTGATAGTTCGGAGTTTGCTGCAAGCCAGGGGTAGGGATAGGCGAGAATTGAGGAGCAG
 
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JMFS107H08+           TACCGGGTACCGGAGCAGGCGGCGTCGCCGGGCGGAAAGTGGGGGCAGGGAAAGGCTGGA
JMFS148D09+           TACCGGGTACCGGAGCAGGCGGCGTCGCCGGGCGGAAAGTGGGGGCAGGGAAAGGCTGGA
JMSF047L11+           TACCGGGTACCGGAGCAGGCGGCGTCGCCGGGCGGAAAGTGGGGGCAGGGAAAGGCTGGA
                      ____________________________________________________________
consensus             TACCGGGTACCGGAGCAGGCGGCGTCGCCGGGCGGAAAGTGGGGGCAGGGAAAGGCTGGA
 
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JMFS107H08+           TCGACGGCGGAGAGATTAGAGAGGGCGGCGGCGGAGTGCTAGGGTTAGCGTTTGGCGGCG
JMFS148D09+           TCGACGGCGGAGAGATTAGAGAGGGCGGCGGCGGAGTGCTAGGGTTAGCGTTTGGCGGCG
JMSF047L11+           TCGACGGCGGAGAGATTAGAGAGGGCGGCGGCGGAGTGCTAGGGTTAGCGTTTGGCGGCG
                      ____________________________________________________________
consensus             TCGACGGCGGAGAGATTAGAGAGGGCGGCGGCGGAGTGCTAGGGTTAGCGTTTGGCGGCG
 
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JMFS107H08+           GAAATAATGATGAAGGTGCGGGAGGCGTTGGTTCGGTAGAG                   
JMFS148D09+           GAAATAATGATGAAGGTGCGGGAGGCGTTGGTTCGGTAGAGGTAGAGGGATCGGGCTGAG
JMSF047L11+           GAAATAATGATGAAGGTGCGGGAGGCGTTGGTTCGGTAGAGGTAGAGGGATCGGGCTGAG
                      ____________________________________________________________
consensus             GAAATAATGATGAAGGTGCGGGAGGCGTTGGTTCGGTAGAGGTAGAGGGATCGGGCTGAG
 
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JMFS148D09+           GTTTCGGGTCAATGGAATCGGTTTCTCGTTGAGGATTGGAATCAGTGGGATCTTGAGGAG
JMSF047L11+           GTTTCGGGTCAATGGAATCGGTTTCTCGTTGAGGATTGGAATCAGTGGGATCTTGAGGAG
                      ____________________________________________________________
consensus             GTTTCGGGTCAATGGAATCGGTTTCTCGTTGAGGATTGGAATCAGTGGGATCTTGAGGAG
 
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JMFS148D09+           GA                                                          
JMSF047L11+           GAGTTGCGTCCGCCATTGTTAGATAGAGAGCTCCTCGACTTGAGTTATTTCTGCGCTGTC
                      ____________________________________________________________
consensus             GAGTTGCGTCCGCCATTGTTAGATAGAGAGCTCCTCGACTTGAGTTATTTCTGCGCTGTC