Contig 006717:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005N03Sequence504006717 (2)ref|XP_009612535.1|5e-21PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]682008656 (2)ref|XP_009612535.1|1e-92PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]
JMSF047J10Sequence680006717 (2)ref|XP_009612535.1|4e-21PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]715008656 (2)ref|XP_009612535.1|2e-90PREDICTED: scarecrow-like protein 30 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF047J10+                                                   TTCTGCAGAACCATTGTCGG
                      ____________________________________________________________
consensus                                                     TTCTGCAGAACCATTGTCGG
 
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JMSF047J10+           AGGAGGAGTAGTAGTAATGGTTTCTTTTCCCCTTGGACGGCGAATTTTCCCCCTCGCTCA
                      ____________________________________________________________
consensus             AGGAGGAGTAGTAGTAATGGTTTCTTTTCCCCTTGGACGGCGAATTTTCCCCCTCGCTCA
 
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JMSF047J10+           GATTGAGAATATTACTGTCATTTGGAAGGCCTATTGCTGCTCCTGTGCTTGCATAGTGAC
                      ____________________________________________________________
consensus             GATTGAGAATATTACTGTCATTTGGAAGGCCTATTGCTGCTCCTGTGCTTGCATAGTGAC
 
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JMFF005N03+                                              TGAAACTGAGGGCTTAAATCTGAAT
JMSF047J10+           TGAACAAAGAGTCGGGGAAGCCATTGGAGGAGCTCTGAAACTGAGGGCTTAAATCTGAAT
                      ____________________________________________________________
consensus             TGAACAAAGAGTCGGGGAAGCCATTGGAGGAGCTCTGAAACTGAGGGCTTAAATCTGAAT
 
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JMFF005N03+           CGCCATTGTTGAGATCAGATGAACAGGTGCTGGGACTACTCCCCGCGAAACTGGGGGTGA
JMSF047J10+           CGCCATTGTTGAGATCAGATGAACAGGTGCTGGGACTACTCCCCGCGAAACTGGGGGTGA
                      ____________________________________________________________
consensus             CGCCATTGTTGAGATCAGATGAACAGGTGCTGGGACTACTCCCCGCGAAACTGGGGGTGA
 
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JMFF005N03+           TGGATACATGCGAGTTTTCGCCCGAGGAGCCGTTAAGCACGTCGGAGAAGTATTTCTCGG
JMSF047J10+           TGGATACATGCGAGTTTTCGCCCGAGGAGCCGTTAAGCACGTCGGAGAAGTATTTCTCGG
                      ____________________________________________________________
consensus             TGGATACATGCGAGTTTTCGCCCGAGGAGCCGTTAAGCACGTCGGAGAAGTATTTCTCGG
 
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JMFF005N03+           TGGCGTGGAGAGCCATGCAGTCGCGAAACATGCAAGGCTGATTCTCCAGGTCCTCCTCCT
JMSF047J10+           TGGCGTGGAGAGCCATGCAGTCGCGAAACATGCAAGGCTGATTCTCCAGGTCCTCCTCCT
                      ____________________________________________________________
consensus             TGGCGTGGAGAGCCATGCAGTCGCGAAACATGCAAGGCTGATTCTCCAGGTCCTCCTCCT
 
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JMFF005N03+           CCATTAACATCTGGTAAATGTACTTGAGAATCGCATCGGAGTAGTCCCCTTCCGGCCCTT
JMSF047J10+           CCATTAACATCTGGTTAATGTACTTGAGAATCGCATCGGAGTAGTCCCCTTCCGGCCCTT
                      ____________________________________________________________
consensus             CCATTAACATCTGGTTAATGTACTTGAGAATCGCATCGGAGTAGTCCCCTTCCGGCCCTT
 
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JMFF005N03+           CCTCCCCTTCGCCTGCAGATCTCTCAACAAGGTTGAATCTCTGCTTCCCCTGATTCACTG
JMSF047J10+           CCTCCCCTTCGCCTGCAGATCTCTCAACAAGGTTGAATCTCTGCTTCCCCTGATTCACTG
                      ____________________________________________________________
consensus             CCTCCCCTTCGCCTGCAGATCTCTCAACAAGGTTGAATCTCTGCTTCCCCTGATTCACTG
 
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JMFF005N03+           GTTTTGAGTGGTGGTTGTAGACGAAATCATTTTGCGTGGTAAACAATTCTTGAACCAGAG
JMSF047J10+           GTTTTGAGTGGTGGTTGTAGACGAAATCATTTTGCGTGGTAAACAATTCTTGAACCAGAG
                      ____________________________________________________________
consensus             GTTTTGAGTGGTGGTTGTAGACGAAATCATTTTGCGTGGTAAACAATTCTTGAACCAGAG
 
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JMFF005N03+           CCTCCATCACAAGAAACCCCAAAGGAAAAAAAATCAAGAAATAAATGGAAGAGTGGAAGA
JMSF047J10+           CCTCCATCACAAGAAACCCCAAAGGAAAAAAAATCAAGAAATAAATGGAAGAGTGGAAGA
                      ____________________________________________________________
consensus             CCTCCATCACAAGAAACCCCAAAGGAAAAAAAATCAAGAAATAAATGGAAGAGTGGAAGA
 
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JMFF005N03+           ACAGAGGGTCTGAAACAGTGGCGAAATGAGAGTGATTTGAAGAGAGGGTTATGGTTTCT 
JMSF047J10+           ACAGAGGGTCTGAAACAGTGGCGAAATGAGAGTGATTTGAAGAGAGGGTTATGGTTTCTC
                      ____________________________________________________________
consensus             ACAGAGGGTCTGAAACAGTGGCGAAATGAGAGTGATTTGAAGAGAGGGTTATGGTTTCTC