Contig 006716:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF047B04Sequence703006716 (2)ref|XP_010650328.1|5e-66PREDICTED: small subunit processome component 20 homolog isoform X2 [Vitis vini744006716 (2)emb|CDP19423.1|7e-66unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF047B04-          AGCCTTCAGTGCACATACCGCATTTTCGCTCGGGAAGTGACATGTGCACCTGATCCTAAA
                      ____________________________________________________________
consensus             AGCCTTCAGTGCACATACCGCATTTTCGCTCGGGAAGTGACATGTGCACCTGATCCTAAA
 
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rJMSF047B04-          CCTATATATATACAACAAAAATGGCGACTAGACTAGACTAGTCTAGTCTGATATAGTCTA
                      ____________________________________________________________
consensus             CCTATATATATACAACAAAAATGGCGACTAGACTAGACTAGTCTAGTCTGATATAGTCTA
 
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rJMSF047B04-          TTGCATCCATCTCGTCATCTTCATTGACATTATTTTCCTCTTCTTATTAGCTTGATGCTT
                      ____________________________________________________________
consensus             TTGCATCCATCTCGTCATCTTCATTGACATTATTTTCCTCTTCTTATTAGCTTGATGCTT
 
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rJMSF047B04-          AGCTGCAATTCTCAACTTCCTCTTAGCATTTCGCATTGGATTTATAACAGCCATGAGCTT
                      ____________________________________________________________
consensus             AGCTGCAATTCTCAACTTCCTCTTAGCATTTCGCATTGGATTTATAACAGCCATGAGCTT
 
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rJMSF047B04-          TTCTTCCTGTTTCCTTCTATCTCTCTTTGCTTTCAGGTTTTTCCTTATTTGGCTGTAAAC
                      ____________________________________________________________
consensus             TTCTTCCTGTTTCCTTCTATCTCTCTTTGCTTTCAGGTTTTTCCTTATTTGGCTGTAAAC
 
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rJMSF047B04-          TTGAACAAAACTCTGCATTCCCAACACATCTCGTATGCTTTCACAAACTTCCTGTGCTAA
                      ____________________________________________________________
consensus             TTGAACAAAACTCTGCATTCCCAACACATCTCGTATGCTTTCACAAACTTCCTGTGCTAA
 
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rJMSF047B04-          TTGCTTCACATCATCTGAAATTACTTTCCCAGCTTGTCCTTCACAAACTTTGTATAGAGG
                      ____________________________________________________________
consensus             TTGCTTCACATCATCTGAAATTACTTTCCCAGCTTGTCCTTCACAAACTTTGTATAGAGG
 
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rJMSF047B04-          CAGCAGGATTTGATAAGCATAGCTCTGGCAATCAACCTCATCTTCAGACTTTGATAATGC
                      ____________________________________________________________
consensus             CAGCAGGATTTGATAAGCATAGCTCTGGCAATCAACCTCATCTTCAGACTTTGATAATGC
 
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rJMSF047B04-          ACTCGATTGATCAAGAAGTTTGATAGACATTGATTTGAAACAGTTGAAGACGATTCTTGT
JMSF047B04+                            GTTTGATAGACATTGATTTGAAACAGTTGANGACGATTCTTGT
                      ____________________________________________________________
consensus             ACTCGATTGATCAAGAAGTTTGATAGACATTGATTTGAAACAGTTGAAGACGATTCTTGT
 
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rJMSF047B04-          CTGCAGTGCCTCCATCTGAATAGGAATCTTCCCCATTCTCTTAAGCAGACAGGAGACGAT
JMSF047B04+           CTGCAGTGCCTCCATCTGAATAGGAATCTTCCCCATTCTCTTAAGCAGACAGGAGACGAT
                      ____________________________________________________________
consensus             CTGCAGTGCCTCCATCTGAATAGGAATCTTCCCCATTCTCTTAAGCAGACAGGAGACGAT
 
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rJMSF047B04-          CATAGAGCCTTGGTGCTCGGTTTGCTGTTCATTGCCCTGAGCACTGTGCTGCAGAACTCC
JMSF047B04+           CATAGAGCCTTGGTGCTCGGTTTGCTGTTCATTGCCCTGAGCACTGTGCTGCAGAACTCC
                      ____________________________________________________________
consensus             CATAGAGCCTTGGTGCTCGGTTTGCTGTTCATTGCCCTGAGCACTGTGCTGCAGAACTCC
 
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rJMSF047B04-          ATAAATGCTGTTTCTCACCCCTATACCAAGAAAAACTATATTCAATAACAGACGTAAGTG
JMSF047B04+           ATAAATGCTGTTTCTCACCCCTATACCAAGAAAAACTATATTCAATAACAGACGTAAGTG
                      ____________________________________________________________
consensus             ATAAATGCTGTTTCTCACCCCTATACCAAGAAAAACTATATTCAATAACAGACGTAAGTG
 
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rJMSF047B04-          ACCCAAATTTCTTCATGTTCTCTG                                    
JMSF047B04+           ACCCAAATTTCTTCATGTTCTCTGCAAGTAGCTTTATGGCAACACCAGCCATAGACCTGA
                      ____________________________________________________________
consensus             ACCCAAATTTCTTCATGTTCTCTGCAAGTAGCTTTATGGCAACACCAGCCATAGACCTGA
 
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JMSF047B04+           CTTTGTTATCTTGGTCATTAGCCAAGCATATTACCAAATGCATAAAAATAGTCTGAGACT
                      ____________________________________________________________
consensus             CTTTGTTATCTTGGTCATTAGCCAAGCATATTACCAAATGCATAAAAATAGTCTGAGACT
 
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JMSF047B04+           GCTCTTGTATTCTGTCTGGAATTTTCACTATGATAGCACGAAGCATTTCAAGAACAGCTT
                      ____________________________________________________________
consensus             GCTCTTGTATTCTGTCTGGAATTTTCACTATGATAGCACGAAGCATTTCAAGAACAGCTT
 
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JMSF047B04+           CTCTACCAGTTGAATGTTCATATCTCAGATTTGCAAGTAAGGAATCAAGATGTTGCTGAA
                      ____________________________________________________________
consensus             CTCTACCAGTTGAATGTTCATATCTCAGATTTGCAAGTAAGGAATCAAGATGTTGCTGAA
 
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JMSF047B04+           AGCGTTTCACCGAAATTGGATAGCAATCTAAGAACTGTAGAAAAATCTTACTGCACTTCC
                      ____________________________________________________________
consensus             AGCGTTTCACCGAAATTGGATAGCAATCTAAGAACTGTAGAAAAATCTTACTGCACTTCC
 
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JMSF047B04+           TGCGAATTGATTCAACTTGACTGGTCACCATCAACTCTGCAACACCCTTGACGACATCAT
                      ____________________________________________________________
consensus             TGCGAATTGATTCAACTTGACTGGTCACCATCAACTCTGCAACACCCTTGACGACATCAT
 
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JMSF047B04+           CGATTTCAGGAGCCACCAACTTTTTCTTTATTATAGCTTTCAGAAGAGAGAGAGCCACAA
                      ____________________________________________________________
consensus             CGATTTCAGGAGCCACCAACTTTTTCTTTATTATAGCTTTCAGAAGAGAGAGAGCCACAA
 
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JMSF047B04+           ATGAGGGATTTCTTTCAAGATCAACAAAAAATGGGAATTGGATAAGTGATTGAAGTTGCC
                      ____________________________________________________________
consensus             ATGAGGGATTTCTTTCAAGATCAACAAAAAATGGGAATTGGATAAGTGATTGAAGTTGCC