Contig 006712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007N24Sequence108006712 (3)717001441 (3)ref|XP_009629784.1|3e-58PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r
JMSF038O09Sequence609006712 (3)ref|XP_009764840.1|7e-16PREDICTED: telomere repeat-binding protein 5 isoform X2 [Nicotiana sylvestris]855001441 (3)ref|XP_009629784.1|1e-58PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r
JMSF046L03Sequence752006712 (3)ref|XP_009629784.1|2e-24PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r716001441 (3)ref|XP_007016385.1|6e-27TRF-like 2, putative isoform 1 [Theobroma cacao] gb|EOY34004.1| TRF-like 2, puta

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046L03+ CTATCGGAAGTCGTTATTACAGACTTAGGNGA
                      ____________________________________________________________
consensus CTATCGGAAGTCGTTATTACAGACTTAGGNGA
 
. : . : . : . : . : . :
JMSF046L03+ CAAACTATCATACGAGAAGTTACTAAACACAGGCGCCTGCGAGACAAGCTTGGACAGGAA
                      ____________________________________________________________
consensus CAAACTATCATACGAGAAGTTACTAAACACAGGCGCCTGCGAGACAAGCTTGGACAGGAA
 
. : . : . : . : . : . :
JMSF038O09+ TCTATCCTC
JMSF046L03+ GAAATTCCTTTCACAGCTACCTTGATTATTTCCCGGTTTTTCTTGCATTGTTCTATCCTC
                      ____________________________________________________________
consensus GAAATTCCTTTCACAGCTACCTTGATTATTTCCCGGTTTTTCTTGCATTGTTCTATCCTC
 
. : . : . : . : . : . :
JMSF038O09+ ANTACCCTTTTCCCTATCAACACTATCTTTCTCGAGACTACACGAGCTTTCTCNTNCGAG
JMSF046L03+ ATTACCCTTTTCCCTATCAACACTATCTTTCTCGAGACTACACGAGCTTTCTCCTTCGAG
                      ____________________________________________________________
consensus ATTACCCTTTTCCCTATCAACACTATCTTTCTCGAGACTACACGAGCTTTCTCCTTCGAG
 
. : . : . : . : . : . :
JMSF038O09+ TAGTAACTTTCCAGCAACGGTAGCTAACAAGTCAAANGAACACATCGGGCTGCCTTCCAC
JMSF046L03+ TAGTAACTTTCCAGCAACGGTAGCTAACAAGTCAAACGAACACATCGGGCTGCCTTCCAC
                      ____________________________________________________________
consensus TAGTAACTTTCCAGCAACGGTAGCTAACAAGTCAAACGAACACATCGGGCTGCCTTCCAC
 
. : . : . : . : . : . :
JMSF038O09+ TNTTCTCCAATTGACGCCTCTCTTCCTAGCTGATCTTGTAGATCGAGGCATAGGAGGCAC
JMSF046L03+ TCTTCTCCAATTGACGCCTCTCTTCCTAGCTGATCTTGTAGATCGAGGCATAGGAGGCAC
                      ____________________________________________________________
consensus TCTTCTCCAATTGACGCCTCTCTTCCTAGCTGATCTTGTAGATCGAGGCATAGGAGGCAC
 
. : . : . : . : . : . :
JMSF038O09+ CCGATAGCCATTAAATCCATAATCCAATCTCTTCTGCAACACCATATCTTACCAACCATG
JMSF046L03+ CCGATAGCCATTAAATCCATAATCCAATCTCTTCTGCAACACCATATCTTACCAACCATG
                      ____________________________________________________________
consensus CCGATAGCCATTAAATCCATAATCCAATCTCTTCTGCAACACCATATCTTACCAACCATG
 
. : . : . : . : . : . :
JMSF038O09+ CCACAATGAATTCAAAACACTCGAAACACTTCAAATAACAGATTTTCCGTCCAAATTCAA
JMSF046L03+ CCACAATGAATTCAAAACACTCGAAACACTTCAAATAACAGATTTTCCGTCCAAATTCAA
                      ____________________________________________________________
consensus CCACAATGAATTCAAAACACTCGAAACACTTCAAATAACAGATTTTCCGTCCAAATTCAA
 
. : . : . : . : . : . :
JMSF038O09+ CCGAATTCCAACTCAAAACCCATGCTTTTTTCCAGAAAGTNGAAACTTTAACACAATTCA
JMSF007N24+ CTTTAACNCAATTCN
JMSF046L03+ CCGAATTCCAACTCAAAACCCATGCTTTTTTCCAGAAAGTCGAAACTTTAACACAATTCA
                      ____________________________________________________________
consensus CCGAATTCCAACTCAAAACCCATGCTTTTTTCCAGAAAGTCGAAACTTTAACACAATTCA
 
. : . : . : . : . : . :
JMSF038O09+ CCGCCGGTAATTCAAGATCGGAGACTCGCCGGAAATTTCCGAGCCCAGAAATCTAATATA
JMSF007N24+ CCGCCGGTAATTCAAGATNGGAGACTCGCCGGAAATTTCCGAGCCCAGANATCTNATNTA
JMSF046L03+ CCGCCGGTAATTCAAGATCGGAGACTCGCCGGAAATTTCCGAGCCCAGAAATCTAATATA
                      ____________________________________________________________
consensus CCGCCGGTAATTCAAGATCGGAGACTCGCCGGAAATTTCCGAGCCCAGAAATCTAATATA
 
. : . : . : . : . : . :
JMSF038O09+ AGAAACACAAAAAACCCAGAATTCTCATCGATCACGCAAGAAATTCTTCACCCCANGATG
JMSF007N24+ AGAAACACAAAAAACCCAGAAT
JMSF046L03+ AGAAACACAAAAAACCCAGAATTCTCATCGATCACGCAAGAAATTCTTCACCCCATGATG
                      ____________________________________________________________
consensus AGAAACACAAAAAACCCAGAATTCTCATCGATCACGCAAGAAATTCTTCACCCCATGATG
 
. : . : . : . : . : . :
JMSF038O09+ TTTGCTTCTTCCCTCCACCTTCATCAAAATCAAAACTTTTTTGTCGTACGCAACCATGGC
JMSF046L03+ TTTGCTTCTTCCCTCCACCTTCATCAAAATCAAAACTTTTTTGTCGTACGCAACCATGGC
                      ____________________________________________________________
consensus TTTGCTTCTTCCCTCCACCTTCATCAAAATCAAAACTTTTTTGTCGTACGCAACCATGGC
 
. : . : . : . : . : . :
JMSF038O09+ TTCGTTGTTCTCCCCGTCTCTCTCTCTCTCTCTGAGATGTCAAAAACCCTCGGAAAACCC
JMSF046L03+ TTCGTTGTTCTCCCCGTCTCTCTCTCTCTCTCTGAGATGTCAAAAACCCTCGGAAAACCC
                      ____________________________________________________________
consensus TTCGTTGTTCTCCCCGTCTCTCTCTCTCTCTCTGAGATGTCAAAAACCCTCGGAAAACCC