Contig 006712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007N24Sequence108006712 (3)717001441 (3)ref|XP_009629784.1|3e-58PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r
JMSF038O09Sequence609006712 (3)ref|XP_009764840.1|7e-16PREDICTED: telomere repeat-binding protein 5 isoform X2 [Nicotiana sylvestris]855001441 (3)ref|XP_009629784.1|1e-58PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r
JMSF046L03Sequence752006712 (3)ref|XP_009629784.1|2e-24PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r716001441 (3)ref|XP_007016385.1|6e-27TRF-like 2, putative isoform 1 [Theobroma cacao] gb|EOY34004.1| TRF-like 2, puta

Alignment

This contig is upended


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JMSF046L03+                                       CTATCGGAAGTCGTTATTACAGACTTAGGNGA
                      ____________________________________________________________
consensus                                         CTATCGGAAGTCGTTATTACAGACTTAGGNGA
 
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JMSF046L03+           CAAACTATCATACGAGAAGTTACTAAACACAGGCGCCTGCGAGACAAGCTTGGACAGGAA
                      ____________________________________________________________
consensus             CAAACTATCATACGAGAAGTTACTAAACACAGGCGCCTGCGAGACAAGCTTGGACAGGAA
 
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JMSF038O09+                                                              TCTATCCTC
JMSF046L03+           GAAATTCCTTTCACAGCTACCTTGATTATTTCCCGGTTTTTCTTGCATTGTTCTATCCTC
                      ____________________________________________________________
consensus             GAAATTCCTTTCACAGCTACCTTGATTATTTCCCGGTTTTTCTTGCATTGTTCTATCCTC
 
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JMSF038O09+           ANTACCCTTTTCCCTATCAACACTATCTTTCTCGAGACTACACGAGCTTTCTCNTNCGAG
JMSF046L03+           ATTACCCTTTTCCCTATCAACACTATCTTTCTCGAGACTACACGAGCTTTCTCCTTCGAG
                      ____________________________________________________________
consensus             ATTACCCTTTTCCCTATCAACACTATCTTTCTCGAGACTACACGAGCTTTCTCCTTCGAG
 
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JMSF038O09+           TAGTAACTTTCCAGCAACGGTAGCTAACAAGTCAAANGAACACATCGGGCTGCCTTCCAC
JMSF046L03+           TAGTAACTTTCCAGCAACGGTAGCTAACAAGTCAAACGAACACATCGGGCTGCCTTCCAC
                      ____________________________________________________________
consensus             TAGTAACTTTCCAGCAACGGTAGCTAACAAGTCAAACGAACACATCGGGCTGCCTTCCAC
 
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JMSF038O09+           TNTTCTCCAATTGACGCCTCTCTTCCTAGCTGATCTTGTAGATCGAGGCATAGGAGGCAC
JMSF046L03+           TCTTCTCCAATTGACGCCTCTCTTCCTAGCTGATCTTGTAGATCGAGGCATAGGAGGCAC
                      ____________________________________________________________
consensus             TCTTCTCCAATTGACGCCTCTCTTCCTAGCTGATCTTGTAGATCGAGGCATAGGAGGCAC
 
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JMSF038O09+           CCGATAGCCATTAAATCCATAATCCAATCTCTTCTGCAACACCATATCTTACCAACCATG
JMSF046L03+           CCGATAGCCATTAAATCCATAATCCAATCTCTTCTGCAACACCATATCTTACCAACCATG
                      ____________________________________________________________
consensus             CCGATAGCCATTAAATCCATAATCCAATCTCTTCTGCAACACCATATCTTACCAACCATG
 
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JMSF038O09+           CCACAATGAATTCAAAACACTCGAAACACTTCAAATAACAGATTTTCCGTCCAAATTCAA
JMSF046L03+           CCACAATGAATTCAAAACACTCGAAACACTTCAAATAACAGATTTTCCGTCCAAATTCAA
                      ____________________________________________________________
consensus             CCACAATGAATTCAAAACACTCGAAACACTTCAAATAACAGATTTTCCGTCCAAATTCAA
 
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JMSF038O09+           CCGAATTCCAACTCAAAACCCATGCTTTTTTCCAGAAAGTNGAAACTTTAACACAATTCA
JMSF007N24+                                                        CTTTAACNCAATTCN
JMSF046L03+           CCGAATTCCAACTCAAAACCCATGCTTTTTTCCAGAAAGTCGAAACTTTAACACAATTCA
                      ____________________________________________________________
consensus             CCGAATTCCAACTCAAAACCCATGCTTTTTTCCAGAAAGTCGAAACTTTAACACAATTCA
 
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JMSF038O09+           CCGCCGGTAATTCAAGATCGGAGACTCGCCGGAAATTTCCGAGCCCAGAAATCTAATATA
JMSF007N24+           CCGCCGGTAATTCAAGATNGGAGACTCGCCGGAAATTTCCGAGCCCAGANATCTNATNTA
JMSF046L03+           CCGCCGGTAATTCAAGATCGGAGACTCGCCGGAAATTTCCGAGCCCAGAAATCTAATATA
                      ____________________________________________________________
consensus             CCGCCGGTAATTCAAGATCGGAGACTCGCCGGAAATTTCCGAGCCCAGAAATCTAATATA
 
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JMSF038O09+           AGAAACACAAAAAACCCAGAATTCTCATCGATCACGCAAGAAATTCTTCACCCCANGATG
JMSF007N24+           AGAAACACAAAAAACCCAGAAT                                      
JMSF046L03+           AGAAACACAAAAAACCCAGAATTCTCATCGATCACGCAAGAAATTCTTCACCCCATGATG
                      ____________________________________________________________
consensus             AGAAACACAAAAAACCCAGAATTCTCATCGATCACGCAAGAAATTCTTCACCCCATGATG
 
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JMSF038O09+           TTTGCTTCTTCCCTCCACCTTCATCAAAATCAAAACTTTTTTGTCGTACGCAACCATGGC
JMSF046L03+           TTTGCTTCTTCCCTCCACCTTCATCAAAATCAAAACTTTTTTGTCGTACGCAACCATGGC
                      ____________________________________________________________
consensus             TTTGCTTCTTCCCTCCACCTTCATCAAAATCAAAACTTTTTTGTCGTACGCAACCATGGC
 
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JMSF038O09+           TTCGTTGTTCTCCCCGTCTCTCTCTCTCTCTCTGAGATGTCAAAAACCCTCGGAAAACCC
JMSF046L03+           TTCGTTGTTCTCCCCGTCTCTCTCTCTCTCTCTGAGATGTCAAAAACCCTCGGAAAACCC
                      ____________________________________________________________
consensus             TTCGTTGTTCTCCCCGTCTCTCTCTCTCTCTCTGAGATGTCAAAAACCCTCGGAAAACCC