Contig 006710:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025N18Sequence616006710 (3)ref|XP_009802816.1|9e-67PREDICTED: protein AAR2 homolog isoform X1 [Nicotiana sylvestris]670001492 (3)emb|CDP02717.1|1e-46unnamed protein product [Coffea canephora]
JMSF046G07Sequence767006710 (3)ref|XP_009629239.1|1e-116PREDICTED: protein AAR2 homolog [Nicotiana tomentosiformis]805001492 (3)ref|XP_009629239.1|3e-89PREDICTED: protein AAR2 homolog [Nicotiana tomentosiformis]
JMSF049N22Sequence611006710 (3)ref|XP_009802816.1|8e-92PREDICTED: protein AAR2 homolog isoform X1 [Nicotiana sylvestris]691001492 (3)emb|CDP02717.1|9e-47unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF046G07+                        TCCAATACCTGTGTCTNGTCAAGGTTCATGTTTGTAAGGTCGTGCCC
                      ____________________________________________________________
consensus                          TCCAATACCTGTGTCTNGTCAAGGTTCATGTTTGTAAGGTCGTGCCC
 
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JMSF046G07+           GGACAATCCCTTATGTTTTATAAGACGAGGAATTGGCGTGAAGTAACAACCTTTTCTTTC
                      ____________________________________________________________
consensus             GGACAATCCCTTATGTTTTATAAGACGAGGAATTGGCGTGAAGTAACAACCTTTTCTTTC
 
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JMSF049N22+                                        TATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
JMSF025N18+                                        TATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
JMSF046G07+           AGGCTTCTCAACTGGCCTTGAAAATTTACTATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
                      ____________________________________________________________
consensus             AGGCTTCTCAACTGGCCTTGAAAATTTACTATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
 
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JMSF049N22+           CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
JMSF025N18+           CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
JMSF046G07+           CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
                      ____________________________________________________________
consensus             CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
 
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JMSF049N22+           TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
JMSF025N18+           TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
JMSF046G07+           TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
                      ____________________________________________________________
consensus             TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
 
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JMSF049N22+           ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
JMSF025N18+           ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
JMSF046G07+           ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
                      ____________________________________________________________
consensus             ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
 
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JMSF049N22+           AGCTTGACCATATCTCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
JMSF025N18+           AGCTTGACCATA--TCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
JMSF046G07+           AGCTTGACCATATCTCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
                      ____________________________________________________________
consensus             AGCTTGACCATATCTCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
 
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JMSF049N22+           ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
JMSF025N18+           ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
JMSF046G07+           ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
                      ____________________________________________________________
consensus             ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
 
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JMSF049N22+           TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
JMSF025N18+           TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
JMSF046G07+           TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
                      ____________________________________________________________
consensus             TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
 
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JMSF049N22+           AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
JMSF025N18+           AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
JMSF046G07+           AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
                      ____________________________________________________________
consensus             AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
 
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JMSF049N22+           GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
JMSF025N18+           GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
JMSF046G07+           GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
                      ____________________________________________________________
consensus             GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
 
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JMSF049N22+           AGCCGCGTCTGGATCCATCTTTCTTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
JMSF025N18+           AGCCGCGTCTGGATCCATCTTTATTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
JMSF046G07+           AGCCGCGTCTGGATCCATCTTTCTTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
                      ____________________________________________________________
consensus             AGCCGCGTCTGGATCCATCTTTCTTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
 
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JMSF049N22+           TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCT                     
JMSF025N18+           TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCT                     
JMSF046G07+           TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCTGAAACACAAAATATTGCGCCC
                      ____________________________________________________________
consensus             TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCTGAAACACAAAATATTGCGCCC