| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017I09 | Sequence | 556 | 006705 (6) | ref|XP_004250657.1| | 5e-97 | PREDICTED: eukaryotic initiation factor 4A-3 [Solanum lycopersicum] | 811 | 011226 (3) | ref|XP_009616974.1| | 4e-118 | PREDICTED: eukaryotic initiation factor 4A-3 [Nicotiana tomentosiformis] |
| JMFF025L23 | Sequence | 627 | 006705 (6) | ref|XP_006366335.1| | 4e-91 | PREDICTED: eukaryotic initiation factor 4A-3-like [Solanum tuberosum] | 813 | 011226 (3) | sp|P41380.1|IF4A3_NICPL | 4e-116 | RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3; AltName: Full= |
| JMFF051G16 | Sequence | 619 | 006705 (6) | ref|XP_006366335.1| | 8e-102 | PREDICTED: eukaryotic initiation factor 4A-3-like [Solanum tuberosum] | 554 | 011226 (3) | dbj|BAD94818.1| | 5e-48 | RNA helicase [Arabidopsis thaliana] |
| JMFS002D02 | Sequence | 496 | 006705 (6) | ref|XP_006366335.1| | 3e-62 | PREDICTED: eukaryotic initiation factor 4A-3-like [Solanum tuberosum] | |||||
| JMFS008H08 | Sequence | 619 | 006705 (6) | ref|XP_006366335.1| | 2e-91 | PREDICTED: eukaryotic initiation factor 4A-3-like [Solanum tuberosum] | |||||
| JMSF045M15 | Sequence | 733 | 006705 (6) | ref|XP_004250657.1| | 9e-116 | PREDICTED: eukaryotic initiation factor 4A-3 [Solanum lycopersicum] | 685 | 004402 (4) | ref|XP_009781292.1| | 1e-27 | PREDICTED: zinc finger protein JACKDAW-like isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF045M15+ TCTCTCTTCAGAT
____________________________________________________________
consensus TCTCTCTTCAGAT
. : . : . : . : . : . :
JMFF051G16+ TAGTACGTAAGGTTCTCCTTTAAATCATATCA
JMSF045M15+ TCATCCAAAATTAGTAGTTTTATTGCTCTAGTACGTAAGGTTCTCCTTTTAATCATATCA
____________________________________________________________
consensus TCATCCAAAATTAGTAGTTTTATTGCTCTAGTACGTAAGGTTCTCCTTTTAATCATATCA
. : . : . : . : . : . :
JMFF025L23+ AACACCATGCTCTAGCTTTCTGATATCC
JMFS008H08+ AAACCACATGAACACCATGCTCTAGCTTTCTGATATCC
JMFF051G16+ CACACTCTTCCAGGAGTTCCAGAAACCACATGAACACCATGCTCTAGCTTTCTGATATCC
JMFF017I09+ TTCCAGGAGTTCCAGAAACCACATGAACACCATGCTCTAGCTTTCTGATATCC
JMSF045M15+ CACACTCTTCCAGGAGTTCCAGAAACCACATGAACACCATGCTCTAGCTTTCTGATATCC
____________________________________________________________
consensus CACACTCTTCCAGGAGTTCCAGAAACCACATGAACACCATGCTCTAGCTTTCTGATATCC
. : . : . : . : . : . :
JMFF025L23+ TCACCCACACTTTTGCCTCCAATACAAGCATGTACCTGAACATTTATGTGATCACCAATG
JMFS008H08+ TCACCCACACTTTTGCCTCCAATACAAGCATGTACCTGAACATTTATGTGATCACCAATG
JMFF051G16+ TCACCCACACTTTTGCCTCCAATACAAGCATGTACCTGAACATTTATGTGATCACCAATG
JMFF017I09+ TCACCCACACTTTTGCCTCCAATACAAGCATGTACCTGAACATTTATGTGATCACCAATG
JMSF045M15+ TCACCCACACTTTTGCCTCCAATACAAGCATGTACCTGAACATTTATGTGATCACCAATG
____________________________________________________________
consensus TCACCCACACTTTTGCCTCCAATACAAGCATGTACCTGAACATTTATGTGATCACCAATG
. : . : . : . : . : . :
JMFF025L23+ GCCAATATCACCTTTTCAGTTTGTGATGCAAGCTCCCTGGTAGGCGACAATATCAATGCT
JMFS008H08+ GCCAATATCACCTTTTCAGTTTGTGATGCAAGCTCCCTGGTAGGCGACAATATCAATGCT
JMFF051G16+ GCCAATATCACCTTTTCAGTTTGTGATGCAAGCTCCCTGGTAGGCGACAATATCAATGCT
JMFF017I09+ GCCAATATCACCTTTTCAGTTTGTGATGCAAGCTCCCTGGTAGGCGACAATATCAATGCT
JMFS002D02+ ATGCAAGCTCCCTGGTAGGCGACAATATCAATGCT
JMSF045M15+ GCCAATATCACCTTTTCAGTTTGTGATGCAAGCTCCCTGGTAGGCGACAATATCAATGCT
____________________________________________________________
consensus GCCAATATCACCTTTTCAGTTTGTGATGCAAGCTCCCTGGTAGGCGACAATATCAATGCT
. : . : . : . : . : . :
JMFF025L23+ TGAACCTCGGAGGATTTGGTGTCGACCATCTGACAAACGGTGAGGGCAATCATGGAGGTC
JMFS008H08+ TGAACCTCGGAGGATTTGGTGTCGACCATCTGACAAACGGTGAGGGCAATCATGGAGGTC
JMFF051G16+ TGAACCTCGGAGGATTTGGTGTCGACCATCTGACAAACGGTGAGGGCAATCATGGAGGTC
JMFF017I09+ TGAACCTCGGAGGATTTGGTGTCGACCATCTGACAAACGGTGAGGGCAATCATGGAGGTC
JMFS002D02+ TGAACCTCGGAGGATTTGGTGTCGACCATCTGACAAACGGTGAGGGCAATCATGGAGGTC
JMSF045M15+ TGAACCTCGGAGGATTTGGTGTCGACCATCTGACAAACGGTGAGGGCAATCATGGAGGTC
____________________________________________________________
consensus TGAACCTCGGAGGATTTGGTGTCGACCATCTGACAAACGGTGAGGGCAATCATGGAGGTC
. : . : . : . : . : . :
JMFF025L23+ TTTCCAGTACCAGATTGGGCCTGGGCAATGACGTCGCGCCCCGACAGGATGGGCAGAACA
JMFS008H08+ TTTCCAGTACCAGATTGGGCCTGGGCAATGACGTCGCGCCCCGACAGGATGGGCAGAACA
JMFF051G16+ TTTCCAGTACCAGATTGGGCCTGGGCAATGACGTCGCGCCCCGACAGGATGGGCAGAACA
JMFF017I09+ TTTCCAGTACCAGATTGGGCCTGGGCAATGACGTCGCGCCCCGACAGGATGGGCAGAACA
JMFS002D02+ TTTCCAGTACCAGATTGGGCCTGGGCAATGACGTCGCGCCCCGACAGGATGGGCAGAACA
JMSF045M15+ TTTCCAGTACCAGATTGGGCCTGGGCAATGACGTCGCGCCCCGACAGGATGGGCAGAACA
____________________________________________________________
consensus TTTCCAGTACCAGATTGGGCCTGGGCAATGACGTCGCGCCCCGACAGGATGGGCAGAACA
. : . : . : . : . : . :
JMFF025L23+ GCCCGCTGCTGGATGGCAGACGGCTTCTCGAACCCGTACGCGTAAATCCCCCGCAAGACG
JMFS008H08+ GCCCGCTGCTGGATGGCAGACGGCTTCTCGAACCCGTACGCGTAAATCCCCCGCAAGACG
JMFF051G16+ GCCCGCTGCTGGATGGCAGACGGCTTCTCGAACCCGTACGCGTAAATCCCCCGCAAGACG
JMFF017I09+ GCCCGCTGCTGGATGGCAGACGGCTTCTCGAACCCGTACGCGTAAATCCCCCGCAAGACG
JMFS002D02+ GCCCGCTGCTGGATGGCAGACGGCTTCTCGAACCCGTACGCGTAAATCCCCCGCAAGACG
JMSF045M15+ GCCCGCTGCTGGATGGCAGACGGCTTCTCGAACCCGTACGCGTAAATCCCCCGCAAGACG
____________________________________________________________
consensus GCCCGCTGCTGGATGGCAGACGGCTTCTCGAACCCGTACGCGTAAATCCCCCGCAAGACG
. : . : . : . : . : . :
JMFF025L23+ TCGTCCTTGACGCCCATCTGCTCGAAGGTCGATATGGGTTCCACCCCCTCCGAGGTCTCG
JMFS008H08+ TCGTCCTTGACGCCCATCTGCTCGAAGGTCGATATGGGTTCCACCCCCTCCGAGGTCTCG
JMFF051G16+ TCGTCCTTGACGCCCATCTGCTCGAAGGTCGATATGGGTTCCACCCCCTCCGAGGTCTCG
JMFF017I09+ TCGTCCTTGACGCCCATCTGCTCGAAGGTCGATATGGGTTCCACCCCCTCCGAGGTCTCG
JMFS002D02+ TCGTCCTTGACGCCCATCTGCTCGAAGGTCGATATGGGTTCCACCCCCTCCGAGGTCTCG
JMSF045M15+ TCGTCCTTGACGCCCATCTGCTCGAAGGTCGATATGGGTTCCACCCCCTCCGAGGTCTCG
____________________________________________________________
consensus TCGTCCTTGACGCCCATCTGCTCGAAGGTCGATATGGGTTCCACCCCCTCCGAGGTCTCG
. : . : . : . : . : . :
JMFF025L23+ AAGGTCATCCTCTCCTCCTCCATCGGTACCCTCCTCCGATTCGCCGGAACCACCGATCCC
JMFS008H08+ AAGGTCATCCTCTCCTCCTCCATCGGTACCCTCCTCCGATTCGCCGAAACCACCGATCCC
JMFF051G16+ AAGGTCATCCTCTCCTCCTCCATCGGTACCCTCCTCCGATTCGCCGGAACCACCGATCCC
JMFF017I09+ AAGGTCATCCTCTCCTCCTCCATCGGTACCCTCCTCCGATTCGCCGGAACCACCGATCCC
JMFS002D02+ AAGGTCATCCTCTCCTCCTCCATCGGTACCCTCCTCCGATTCGCCGAAACCACCGATCCC
JMSF045M15+ AAGGTCATCCTCTCCTCCTCCATCGGTACCCTCCTCCGATTCGCCGGAACCACCGATCCC
____________________________________________________________
consensus AAGGTCATCCTCTCCTCCTCCATCGGTACCCTCCTCCGATTCGCCGGAACCACCGATCCC
. : . : . : . : . : . :
JMFF025L23+ GAAGCTATCGCCGCCATAATTATCGAGTGAAATCAACACCAATGTTTCACGGAATTGGGT
JMFS008H08+ GAAGCTATCGCCGCCATAATTATCGAGTGAAATCAACACCAATGTTTCACGGAATTGGGT
JMFF051G16+ GAAGCTATCGCCGCCATAATTATCGAGTGAAATCAACACCAATGTTTCACGGAATTGGGT
JMFF017I09+ GAAGCTATCGCCGCCATAATTATCGAGTGAAATCAACACCAATGTTTCACGGAATTGGGT
JMFS002D02+ GAAGCTATCGCCGCCATAATTATCGAGTGAAATCAACACCAATGTTTCACGGAATTGGGT
JMSF045M15+ GAAGCTATCGCCGCCATAATTATCGAGTGAAATCAACACCAATGTTTCACGGAATTGGGT
____________________________________________________________
consensus GAAGCTATCGCCGCCATAATTATCGAGTGAAATCAACACCAATGTTTCACGGAATTGGGT
. : . : . : . : . : . :
JMFF025L23+ GGTGGCCTGGAAGATAAACAATCAAACCTAGAAAAATTTTCCCCCGCTTTTTAAAGCTGA
JMFS008H08+ GGTGGCCTGGAAGATAAACAATCAAACCTAGAAAAA-TTTCCCCCGCTTTTTAAAGCTGA
JMFF051G16+ GGTGGCCTGGAAGAT
JMFF017I09+ GGTGGCCTGGAAGATAAACAATC
JMFS002D02+ GGTGGCCTGGAAGATAAACAATCAAACCTAGAAAAA-TTTCCCCCGCTTTTTAAAGCTGA
JMSF045M15+ GGTGGCCTGGAAGATAAACAATCAAACCTAGAAAAATTTTCCCCCGCTTTTTAAAGCTGA
____________________________________________________________
consensus GGTGGCCTGGAAGATAAACAATCAAACCTAGAAAAATTTTCCCCCGCTTTTTAAAGCTGA
. : . : . : . : . : . :
JMFF025L23+ GATAGATAAAAGCCGCTACTGGAGAGAAGCCGAACCCTAGTACGGAGTAATATCCA
JMFS008H08+ GATAGATAAAAGCCGCTACTGGAGAGAAGCCGAACCCTAGTA
JMFS002D02+ GATAGATAAAAGCCGCTACTGGAGAGAAGCCGAACCCTAGTA
JMSF045M15+ GATAGATAAAAGCCGCTACTGGAGAGAAGCCGAACCCTAGTACGGAGTAATATCCAAGTC
____________________________________________________________
consensus GATAGATAAAAGCCGCTACTGGAGAGAAGCCGAACCCTAGTACGGAGTAATATCCAAGTC