Contig 006702:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS099B12Sequence626006702 (2)ref|XP_009614707.1|2e-35PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A
JMSF045I21Sequence721006702 (2)ref|XP_009614707.1|3e-46PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A773019432emb|CAN76686.1|2e-91hypothetical protein VITISV_005469 [Vitis vinifera]

Alignment

This contig is upended


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JMSF045I21+                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
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JMSF045I21+           CTGAGCCAGACAAGCTATTTTCACTCAGATCAATCACACTCAAGCTGGGAATTTGGGCAA
                      ____________________________________________________________
consensus             CTGAGCCAGACAAGCTATTTTCACTCAGATCAATCACACTCAAGCTGGGAATTTGGGCAA
 
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JMFS099B12+             ACTGGATTGATATTCCCAGTGAAATTGTTCTTGGACAAAGATAACACTCTCAAGAACT
JMSF045I21+           GAACTGGATTGATATTCCCAGTGAAATTGTTCTTGGACAAAGATAACACTCTCAAGAACT
                      ____________________________________________________________
consensus             GAACTGGATTGATATTCCCAGTGAAATTGTTCTTGGACAAAGATAACACTCTCAAGAACT
 
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JMFS099B12+           GCAACCTCAAAAGGCCTCTACCTATGTGCCCAGAAAGAAAGAAATTGTCAAGAACAACCT
JMSF045I21+           GCAACCTCAAAAGGCCTCTACCTATGTGCCCAGAAAGAAAGAAATTGTCAAGAACAACCT
                      ____________________________________________________________
consensus             GCAACCTCAAAAGGCCTCTACCTATGTGCCCAGAAAGAAAGAAATTGTCAAGAACAACCT
 
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JMFS099B12+           CAGAGACTCTATTGGACTGAGGATCACACTTAATCCCATTCCAGGTACAGGGGCTCTCAG
JMSF045I21+           CAGAGACTCTATTGGACTGAGGATCACACTTAATCCCATTCCAGGTACAGGGGCTCTCAG
                      ____________________________________________________________
consensus             CAGAGACTCTATTGGACTGAGGATCACACTTAATCCCATTCCAGGTACAGGGGCTCTCAG
 
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JMFS099B12+           CATCCTCATTCCAAGATTCGAGCTTTGATTCCGGGTCTATAATCCCAGCTTTGAAGACAA
JMSF045I21+           CATCCTCATTCCAAGATTCGAGCTTTGATTCCGGGTCTATAATCCCAGCTTTGAAGACAA
                      ____________________________________________________________
consensus             CATCCTCATTCCAAGATTCGAGCTTTGATTCCGGGTCTATAATCCCAGCTTTGAAGACAA
 
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JMFS099B12+           TCAAACCCAGAACATCATCGTTAAAAGCCGGGTCTAGCGAGAGCACAAGAACCGGAATCA
JMSF045I21+           TCAAACCCAGAACATCATCGTTAAAAGCCGGGTCTAGCGAGAGCACAAGAACCGGAATCA
                      ____________________________________________________________
consensus             TCAAACCCAGAACATCATCGTTAAAAGCCGGGTCTAGCGAGAGCACAAGAACCGGAATCA
 
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JMFS099B12+           AGAATAAAAAAGCAGTTAAAATATTCAGTAACATTTCCACCCAACACAAAGTTTAAGCAG
JMSF045I21+           AGAATAAAAAAGCAGTTAAAATATTCAGTAACATTTCCACCCAACACAAAGTTTAAGCAG
                      ____________________________________________________________
consensus             AGAATAAAAAAGCAGTTAAAATATTCAGTAACATTTCCACCCAACACAAAGTTTAAGCAG
 
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JMFS099B12+           AAGAGAGAATGACAACAAGAGGAAACATTGGGGGGAGAAGGAGGGGTCTCTTAACTTTCG
JMSF045I21+           AAGAGAGAATGACAACAAGAGGAAACATTGGGGGGAGAAGGAGGGGTCTCTTAACTTTCG
                      ____________________________________________________________
consensus             AAGAGAGAATGACAACAAGAGGAAACATTGGGGGGAGAAGGAGGGGTCTCTTAACTTTCG
 
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JMFS099B12+           TAAAGACAAAAACTTTCCTCCGTTAAGCCGGAAATGCAACCGGAAATCAGAAGACTCCGA
JMSF045I21+           TAAAGACAAAAACTTTCCTCCGTTAAGCCGGAAATGCAACCGGAAATCAGAAGACTCCGA
                      ____________________________________________________________
consensus             TAAAGACAAAAACTTTCCTCCGTTAAGCCGGAAATGCAACCGGAAATCAGAAGACTCCGA
 
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JMFS099B12+           GCCCAACAACCGCCTGAAAAAAGAAGTTTCTTCCCACAAAAGCAAATTGTTTTGCGGGGC
JMSF045I21+           GCCCAACAACCGCCTGAAAAAAGAAGTTTCTTCCCACAAAAGCAAATTGTTTTGCGGGGC
                      ____________________________________________________________
consensus             GCCCAACAACCGCCTGAAAAAAGAAGTTTCTTCCCACAAAAGCAAATTGTTTTGCGGGGC
 
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JMFS099B12+           CAATCTCAGAACAAGAATAGCAGTGGGGAGCACAAAAGCGCTTGTCAGCTTGCGTGCTTT
JMSF045I21+           CAATCTCAGAACAAGAATAGCAGTGGGGAGCACAAAAGCGCTTGTCAGCTTGCGTGCTTT
                      ____________________________________________________________
consensus             CAATCTCAGAACAAGAATAGCAGTGGGGAGCACAAAAGCGCTTGTCAGCTTGCGTGCTTT
 
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JMFS099B12+           TGAGCAAGAGAGAGATGGGTTTAGTGCG                                
JMSF045I21+           TGAGCAAGAGAGAGATGGGTTTAGTGCGCGCCGTCGTGGTTGCTAAACCTGAAACCTCTC
                      ____________________________________________________________
consensus             TGAGCAAGAGAGAGATGGGTTTAGTGCGCGCCGTCGTGGTTGCTAAACCTGAAACCTCTC