Contig 006699:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF013H18-                  AAATTACATTTTCAATCACTACTGGGTTGAAGAGGAAGCATCTAAGCCAAAA
rJMSF012N03-             GACGAAAATTACATTTTCAATCACTACTGGGTTGAAGAGGAAGCATCTAAGCCAAAA
                      ____________________________________________________________
consensus                GACGAAAATTACATTTTCAATCACTACTGGGTTGAAGAGGAAGCATCTAAGCCAAAA
 
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rJMSF013H18-          CAAAGGTAAATCTATCTACTAATATGATTATTACACCACTAATGCTTGAAATCACTCTTA
rJMSF012N03-          CAAAGGTAAATCTATCTACTAATATGATTATTACACCACTAATGCTTGAAATCACTCTTA
                      ____________________________________________________________
consensus             CAAAGGTAAATCTATCTACTAATATGATTATTACACCACTAATGCTTGAAATCACTCTTA
 
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rJMSF013H18-          GATATATAGCCATATTAGCATGAAAAACAGTCTGGATTTAAAACAATTTCAAAATTTCCA
rJMSF012N03-          GATATATAGCCATATTAGCATGAAAAACAGTCTGGATTTAAAACAATTTCAAAATTTCCA
                      ____________________________________________________________
consensus             GATATATAGCCATATTAGCATGAAAAACAGTCTGGATTTAAAACAATTTCAAAATTTCCA
 
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rJMSF013H18-          GAAAACAGAGGAATAAGATTGGAAAAACTTATCTCTGTAGCAAATCGCATCACTTTTTCT
rJMSF012N03-          GAAAACAGAGGAATAAGATTGGAAAAACTTATCTCTGTAGCAAATCGCATCACTTTTTCT
                      ____________________________________________________________
consensus             GAAAACAGAGGAATAAGATTGGAAAAACTTATCTCTGTAGCAAATCGCATCACTTTTTCT
 
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rJMSF013H18-          GGATCCCAACATAGTCCTGACATATATTAACACAAGACTAGACGTCGTTGTTAAATATAA
rJMSF012N03-          GGATCCCAACATAGTCCTGACATATATTAACACAAGACTAGACGTCGTTGTTAAATATAA
JMSF045C08+                                                                      A
                      ____________________________________________________________
consensus             GGATCCCAACATAGTCCTGACATATATTAACACAAGACTAGACGTCGTTGTTAAATATAA
 
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rJMSF013H18-          AGTCTGTTTTTAAAATAAATATGAAAATAACATATTGAAAGAAAAAATTAAAAACAAAAA
rJMSF012N03-          AGTCTGTTTTTAAAATAAATATGAAAATAACATATTGAAAGAAAAAATTAAAAACAAAAA
JMSF045C08+           AGTCTGTTTTTAAAATAAATATGAAAATAACATNTTGAAAGAAAAAATTAAAAACAAAAA
                      ____________________________________________________________
consensus             AGTCTGTTTTTAAAATAAATATGAAAATAACATATTGAAAGAAAAAATTAAAAACAAAAA
 
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rJMSF013H18-          GAAACTTCGCAACCGCGAGTCCACTAAGCTAATGCAGATACTAACATTAGAATACAATTT
rJMSF012N03-          GAAACTTCGCAACCGCGAGTCCACTAAGCTAATGCAGATACTAACATTAGAATACAATTT
JMSF045C08+           GAAACTTCGCAACCGCGAGTCCACTAAGCTAATGCAGATACTAACATTAGAATACAATTT
                      ____________________________________________________________
consensus             GAAACTTCGCAACCGCGAGTCCACTAAGCTAATGCAGATACTAACATTAGAATACAATTT
 
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rJMSF013H18-          TTTTTTTTCAAAATCCAGANGCANGNGTTTTCCAANGAANGATTTCATCAGATCTACNCT
rJMSF012N03-          TTTTTTTTCAAAATCCAGATGCANGNGTTTTCCAANGAANGATTTCATCAGATCTACNCT
JMSF045C08+           TTTTTTTTCAAAATCCAGATGCATGTGTTTTCCAATGAATGATTTCATCAGATCTACACT
                      ____________________________________________________________
consensus             TTTTTTTTCAAAATCCAGATGCATGTGTTTTCCAATGAATGATTTCATCAGATCTACACT
 
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rJMSF013H18-          TTAATTGGACTTAGTAGTTAAACGAACCCTTAACNGTTAGGGTTCACCGTATCAGTTAAN
rJMSF012N03-          TTAATTGGACTTAGTAGTTAAACGAACCCTTAACNGTTAGGGTTCACCGTATCAGTTAAN
JMSF013H18+                  GACTTAGTAGTTAAACGAACCCTTAACTGTTAGGGTTCACCGTATCAGTTAAA
JMSF045C08+           TTAATTGGACTTAGTAGTTAAACGAACCCTTAACTGTTAGGGTTCACCGTATCAGTTAAA
                      ____________________________________________________________
consensus             TTAATTGGACTTAGTAGTTAAACGAACCCTTAACTGTTAGGGTTCACCGTATCAGTTAAA
 
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rJMSF013H18-          CAACATAGATGGATAAATCCTAAATATATCATACTTAGATCTGAAACAGTAAAGATGTTA
rJMSF012N03-          CANCATAGATGGATAAATCCTAAATATATCATACTTAGATCTGAAACAGTAAAGATGTTA
JMSF013H18+           CAACATAGATAGATAAATCCTAAATATATCATACTTAGATCTGAAACAGTAAAGATGTTA
JMSF012N03+             ACATAGATAGATAAATCCTAAATATATCATACTTAGATCTGAAACAGTAAAGATGTTA
JMSF045C08+           CAACATAGATAGATAAATCCTAAATATATCATACTTAGATCTGAAACAGTAAAGATGTTA
                      ____________________________________________________________
consensus             CAACATAGATAGATAAATCCTAAATATATCATACTTAGATCTGAAACAGTAAAGATGTTA
 
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rJMSF013H18-          CGGTTAGAAATCCTCNCCGAATTAGGTAGAAATTGTCAACTAATCTGTAAGCAACCGNGT
rJMSF012N03-          CGGTTAGAAATCCTCACCGAATTAGGTAGAAATTGTCAACTAATCTGTAAGCAACCGNGT
JMSF013H18+           CGGTTAGAAATCCTCACCGAATTAGGTAGAAATTGTCAACTAATCTGTAAGCANCCGTGT
JMSF012N03+           CGGTTAGAAATCCTCACCGAATTAGGTAGAAATTGTCAACTAATCTGTAAGCANCCGTGT
JMSF045C08+           CGGTTAGAAATCCTCACCGAATTAGGTAGAAATTGTCAACTAATCTGTAAGCAACCGTGT
                      ____________________________________________________________
consensus             CGGTTAGAAATCCTCACCGAATTAGGTAGAAATTGTCAACTAATCTGTAAGCAACCGTGT
 
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rJMSF013H18-          AGATTTGCNCAAATTTAACATGCNCTTCNCCTGACC                        
rJMSF012N03-          AGATTTGCNCAAATTTAACATGCNCTTCACCTGACCTGTATAATCATAG           
JMSF013H18+           AGATTTGCACAAATTTAACATGCACTTCACCTGACCTGTATAATCATAGTTAAGCTCCGA
JMSF012N03+           AGATTTGCACAAATTTAACATGCACTTCACCTGACCTGTATAATCATAGTTAAGCTCCGA
JMSF045C08+           AGATTTGCACAAATTTAACATGCACTTCACCTGACCTGTATAATCATAGTTAAGCTCCGA
                      ____________________________________________________________
consensus             AGATTTGCACAAATTTAACATGCACTTCACCTGACCTGTATAATCATAGTTAAGCTCCGA
 
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JMSF013H18+           TCTCTCTCTACGGTCGTATTCCGACGAAGGATAATGTTCACTGGTTTTGACACATATGAC
JMSF012N03+           TCTCTCTCTACGGTCGTATTCCGACGAAGGATAATGTTCACTGGTTTTGACACATATGAC
JMSF045C08+           TCTCTCTCTACGGTCGTATTCCGACGAAGGATAATGTTCACTGGTTTTGACACATATGAC
                      ____________________________________________________________
consensus             TCTCTCTCTACGGTCGTATTCCGACGAAGGATAATGTTCACTGGTTTTGACACATATGAC
 
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JMSF013H18+           ATAAAATCGGTGAAGACTGGAAACCTACGGGAAATATGGATTTAACACTCAGAGACGAAG
JMSF012N03+           ATAAAATCGGTGAAGACTGGAAACCTACGGGAAATATGGATTTAACACTCAGAGACGAAG
JMSF045C08+           ATAAAATCGGTGAAGACTGGAAACCTACGGGAAATATGGATTTAACACTCAGAGACGAAG
                      ____________________________________________________________
consensus             ATAAAATCGGTGAAGACTGGAAACCTACGGGAAATATGGATTTAACACTCAGAGACGAAG
 
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JMSF013H18+           TATTTCTATAACGATCGGCGATTTTTATAGTGAAACAAAATCATCTTCATCGTGAACCAT
JMSF012N03+           TATTTCTATAACGATCGGCGATTTTTATAGTGAAACAAAATCATCTTCATCGTGAACCAT
JMSF045C08+           TATTTCTATAACGATCGGCGATTTTTATAGTGAAACAAAATCATCTTCATCGTGAACCAT
                      ____________________________________________________________
consensus             TATTTCTATAACGATCGGCGATTTTTATAGTGAAACAAAATCATCTTCATCGTGAACCAT
 
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JMSF013H18+           TGGATAGAGAGAGAGAGAGAGAGAGAGAACTGAGAAAATGATAAGCCGGAGGAAGCACCC
JMSF012N03+           TGGATAGAGAGAGAGAGAGAGAGAGAGAACTGAGAAAATGATAAGCCGGAGGAAGCACCC
JMSF045C08+           TGGATAGAGAGAGAGAGAGAGAGAGAGAACTGAGAAAATGATAAGCCGGAGGAAGCACCC
                      ____________________________________________________________
consensus             TGGATAGAGAGAGAGAGAGAGAGAGAGAACTGAGAAAATGATAAGCCGGAGGAAGCACCC
 
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JMSF013H18+           TCCACTTTTAGAGAGGGAGAGAACTGCT                                
JMSF012N03+           TCCACTTTTAGAGAGGGAGAGAACTGCTGAAATGAGATTGACCGGACAGGCCA       
JMSF045C08+           TCCACTTTTAGAGAGGGAGAGAACTGCTGAAATGAGATTGACCGGACAGGCCACAAGATC
                      ____________________________________________________________
consensus             TCCACTTTTAGAGAGGGAGAGAACTGCTGAAATGAGATTGACCGGACAGGCCACAAGATC