Contig 006698:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044O16Sequence684006698 (2)emb|CDP15964.1|7e-64unnamed protein product [Coffea canephora]625006698 (2)ref|XP_004240148.1|2e-40PREDICTED: nifU-like protein 3, chloroplastic [Solanum lycopersicum] ref|XP_0042

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-                                                            TGATGTCGTT
                      ____________________________________________________________
consensus                                                               TGATGTCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          TGGGATTAGAGTCCACCATTGCCCACACGATATAAATTGCGTTGAAAGAATAAAATGCTA
                      ____________________________________________________________
consensus             TGGGATTAGAGTCCACCATTGCCCACACGATATAAATTGCGTTGAAAGAATAAAATGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          TACTCCTAAAATTGTATTTTACACTCTAAATGCATCCCTATCTCAAGCAATTCCTCAAAA
                      ____________________________________________________________
consensus             TACTCCTAAAATTGTATTTTACACTCTAAATGCATCCCTATCTCAAGCAATTCCTCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          GTGTTTAAAGCATTATAAAAATAAAGAGCAGGCAGAAGAAACAGGTTTAGCTAACTTCAT
                      ____________________________________________________________
consensus             GTGTTTAAAGCATTATAAAAATAAAGAGCAGGCAGAAGAAACAGGTTTAGCTAACTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          AATTCTACATAGAAAAGCAGATCACCATAGCCATCCGGCCTCATGGCCTTAAGAAATATG
                      ____________________________________________________________
consensus             AATTCTACATAGAAAAGCAGATCACCATAGCCATCCGGCCTCATGGCCTTAAGAAATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          AATTCGTTTTTTTGTTTTTCATTTTTGTTAAACAAGTATTTTATGTGGTATTTTAATCAA
                      ____________________________________________________________
consensus             AATTCGTTTTTTTGTTTTTCATTTTTGTTAAACAAGTATTTTATGTGGTATTTTAATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          CTAACCGAACAGCAGCTATTGCAGGTATTGCTTCTCTTAGCTTTTGTGTTAGAGCTACAC
                      ____________________________________________________________
consensus             CTAACCGAACAGCAGCTATTGCAGGTATTGCTTCTCTTAGCTTTTGTGTTAGAGCTACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          GCACTGTCATCACACTAGCAGCAGCGCCACTAAGGCGGACCGTGACAACATACTCTTCGA
                      ____________________________________________________________
consensus             GCACTGTCATCACACTAGCAGCAGCGCCACTAAGGCGGACCGTGACAACATACTCTTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          TCTGCATGAGTTCCAGTTCTCCACCACCTGCGCCCACTAAATACGGTCTGATCTCTGCAA
JMSF044O16+                                               CTAAATACGGTCTGATCTCTGCAA
                      ____________________________________________________________
consensus             TCTGCATGAGTTCCAGTTCTCCACCACCTGCGCCCACTAAATACGGTCTGATCTCTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          GAAGCTTTTCAATATTTTCTTCATTCAACTCGAGGCCAGTCTCAGTGTCAAGAATTTGTT
JMSF044O16+           GAAGCTTTTCAATATTTTCTTCATTCAACTCGAGGCCAGTCTCAGTGTCAAGAATTTGTT
                      ____________________________________________________________
consensus             GAAGCTTTTCAATATTTTCTTCATTCAACTCGAGGCCAGTCTCAGTGTCAAGAATTTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          CAACCGCTTCAATTTCTGGAATTTTATCACGAAGGCGGGTTTCAATTCCCATCTTTAATG
JMSF044O16+           CAACCGCTTCAATTTCTGGAATTTTATCACGAAGGCGGGTTTCAATTCCCATCTTTAATG
                      ____________________________________________________________
consensus             CAACCGCTTCAATTTCTGGAATTTTATCACGAAGGCGGGTTTCAATTCCCATCTTTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044O16-          TCAATGTAAA                                                  
JMSF044O16+           TCAATGTAAAACTTGGACAGGACCCACAAGCTCCCTGTAGCTTTAGCACTACAACAAGGC
                      ____________________________________________________________
consensus             TCAATGTAAAACTTGGACAGGACCCACAAGCTCCCTGTAGCTTTAGCACTACAACAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           CATCAATCTCATGTAGAGCCACATTCCCTCCATCAGCCATTAAGCCCGGTCTGACTTCAT
                      ____________________________________________________________
consensus             CATCAATCTCATGTAGAGCCACATTCCCTCCATCAGCCATTAAGCCCGGTCTGACTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           CCAGAACCTTTTCAACATTTTCCTCTGTAAGAGGGAGGATAGAACTAGGAGAAACCACAG
                      ____________________________________________________________
consensus             CCAGAACCTTTTCAACATTTTCCTCTGTAAGAGGGAGGATAGAACTAGGAGAAACCACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           TACCTGCACGTTTTCTGTGCCGACCAGCCCACTTGACTCCAGTGATGTGTCTAATGTGAT
                      ____________________________________________________________
consensus             TACCTGCACGTTTTCTGTGCCGACCAGCCCACTTGACTCCAGTGATGTGTCTAATGTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           ATTGACCTTTTAGAAATGAACTTTGCTTCAACGGTAAAGTGCATATCCTTGATGAGGGAT
                      ____________________________________________________________
consensus             ATTGACCTTTTAGAAATGAACTTTGCTTCAACGGTAAAGTGCATATCCTTGATGAGGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           ACAATGATGAAGGCAACCATTCAGATGAGTGGTTGAAATTGCATGCATGATGAACTTCAC
                      ____________________________________________________________
consensus             ACAATGATGAAGGCAACCATTCAGATGAGTGGTTGAAATTGCATGCATGATGAACTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           CTTCTGTACATAAATGAAGCTTGAGACTTCATGTTTCAAATGTGATTCGTTCGTCGAGGC
                      ____________________________________________________________
consensus             CTTCTGTACATAAATGAAGCTTGAGACTTCATGTTTCAAATGTGATTCGTTCGTCGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           GGCGGAGCAGGCAGCCGGCGACGAGTTTGGGATTGGAATGTGGAGTGATTTTGGGTATTT
                      ____________________________________________________________
consensus             GGCGGAGCAGGCAGCCGGCGACGAGTTTGGGATTGGAATGTGGAGTGATTTTGGGTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044O16+           CTATCTCTTTTTGCAACCTTGGAGGCTTTGTTGTAGTTTTGAAGTGTGAGGTGGTTATTC
                      ____________________________________________________________
consensus             CTATCTCTTTTTGCAACCTTGGAGGCTTTGTTGTAGTTTTGAAGTGTGAGGTGGTTATTC