Contig 006696:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044M15Sequence734006696 (2)ref|XP_009598786.1|4e-63PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi721012292 (6)ref|XP_004240115.1|1e-87PREDICTED: probable protein S-acyltransferase 12 [Solanum lycopersicum]
JMSF051E04Sequence666006696 (2)ref|XP_009598786.1|1e-43PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi689006145 (15)emb|CDP03875.1|4e-77unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044M15+                                                         CTCGCGCATCAAAT
                      ____________________________________________________________
consensus                                                           CTCGCGCATCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+                                                                   TAGC
JMSF044M15+           TTGTCGGTTCACTCANAACGTACTTTGGTAACTCATACTTTGCACCTCTTTCGTCATAGC
                      ____________________________________________________________
consensus             TTGTCGGTTCACTCANAACGTACTTTGGTAACTCATACTTTGCACCTCTTTCGTCATAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           AGATTGTCAGATCAGAGGCTTGAACANTAATACCAGCACTGTCCACAATAGCCTGGGCAA
JMSF044M15+           AGATTGTCAGATCAGAGGCTTGAACAATAATACCAGCACTGTCCACAATAGCCTGGGCAA
                      ____________________________________________________________
consensus             AGATTGTCAGATCAGAGGCTTGAACAATAATACCAGCACTGTCCACAATAGCCTGGGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           GGGATATGTCAGCCTCAGCAGCAGCCCTAAGTGCATCCCAGATCTCTTTCCGACCACCAT
JMSF044M15+           GGGATATGTCAGCCTCAGCAGCAGCCCTAAGTGCATCCCAGATCTCTTTCCGACCACCAT
                      ____________________________________________________________
consensus             GGGATATGTCAGCCTCAGCAGCAGCCCTAAGTGCATCCCAGATCTCTTTCCGACCACCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           AGTGTGGTGCCGTGTCCCAAAATTCATCACGCATCTGTACAAGTTGAGCCCTCGTTATTG
JMSF044M15+           AGTGTGGTGCCGTGTCCCAAAATTCATCACGCATCTGTACAAGTTGAGCCCTCGTTATTG
                      ____________________________________________________________
consensus             AGTGTGGTGCCGTGTCCCAAAATTCATCACGCATCTGTACAAGTTGAGCCCTCGTTATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           CTTCTGAATGTTTCCANGGTTTTGGCTTCCGTATCTTCTTAACAGTCTCATCTCCNTTCG
JMSF044M15+           CTTCTGAATGTTTCCAAGGTTTTGGCTTCCGTATCTTCTTAACAGTCTCATCTCCTTTCG
                      ____________________________________________________________
consensus             CTTCTGAATGTTTCCAAGGTTTTGGCTTCCGTATCTTCTTAACAGTCTCATCTCCTTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           AACGCGAAGATCCCGAGCAGCCCANGCTACACAGCCACTGGGAATCTTGGGTAGCTAGCT
JMSF044M15+           AACGCGAAGATCCCGAGCAGCCCANGCTACACANCCACTGGGAATCTTGGGTAGCTAGCT
                      ____________________________________________________________
consensus             AACGCGAAGATCCCGAGCAGCCCANGCTACACAGCCACTGGGAATCTTGGGTAGCTAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           AATTCAGGAATCTATATATATAAATATATCCACGGCAGATATATATATATACACACACAG
JMSF044M15+           AATTCAGGAATCTATATATATAAATATATCCACGGCAGATATATATATATACACACACAG
                      ____________________________________________________________
consensus             AATTCAGGAATCTATATATATAAATATATCCACGGCAGATATATATATATACACACACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           AGTAGAGAGAAAGAGATTACAGGAAATGAATTTATCGGTACTTGTTTTGAGAGCTTTTGC
JMSF044M15+           AGTAGAGAGAAAGAGATTACAGGAAATGAATTTATCGGTACTTGTTTTGAGAGCTTTTGC
                      ____________________________________________________________
consensus             AGTAGAGAGAAAGAGATTACAGGAAATGAATTTATCGGTACTTGTTTTGAGAGCTTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           GTGCTCGCGACTCTATCTCATTCCCAGCTATACACATACACACACACATATATGTATATA
JMSF044M15+           GTGCTCGCGACTCTATCTCATTCCCAGCTATACACATACACACACACATATATGTATATA
                      ____________________________________________________________
consensus             GTGCTCGCGACTCTATCTCATTCCCAGCTATACACATACACACACACATATATGTATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           TATAACCTGTACTCTCTCCTCTTCTCTCTCTCTCTACATATACATATATGTGGTGTATGT
JMSF044M15+           TATAACCTGTACTCTCTCCTCTTCTCTCTCTCTCTACATATACATATATGTGGTGTATGT
                      ____________________________________________________________
consensus             TATAACCTGTACTCTCTCCTCTTCTCTCTCTCTCTACATATACATATATGTGGTGTATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           ATCCGTCAGTTTTGGGTATTTACCATGGACGCGCGGTGAAACAGAGTGTCCGTTTGTAGA
JMSF044M15+           ATCCGTCAGTTTTGGGTATTTACCATGGACGCGCGGTGAAACAGAGTGTCCGTTTGTAGA
                      ____________________________________________________________
consensus             ATCCGTCAGTTTTGGGTATTTACCATGGACGCGCGGTGAAACAGAGTGTCCGTTTGTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051E04+           GAGAGAGAGAGAGAGAGATGAAGAGGTGGAGAAGATGAAGGAGACTAGGAGAGTCCAC  
JMSF044M15+           GAGAGAGAGAGAGAGAGATGAAGAGGTGGAGAAGATGAAGGAGACTAGGAGAGTCCACTC
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGAGAGATGAAGAGGTGGAGAAGATGAAGGAGACTAGGAGAGTCCACTC