Contig 006692:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF002J15-                   GAGATTGGATTATTGATGGTGGCGCTTAGCTTCCAACCAATCCACAAGCCAT
                      ____________________________________________________________
consensus                     GAGATTGGATTATTGATGGTGGCGCTTAGCTTCCAACCAATCCACAAGCCAT
 
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JMSF002J15-           ACACAGGGGGCTCAGCTTTTCCTGATAGCTCTTGGTGCCGACGGCAATGGACTCGCCGGA
                      ____________________________________________________________
consensus             ACACAGGGGGCTCAGCTTTTCCTGATAGCTCTTGGTGCCGACGGCAATGGACTCGCCGGA
 
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JMSF002J15-           GAAGCCTTACTCTTCGGTGCGGTATTGCGGAGCCGTCGGGGCAGCCGGCACCGATGGGCC
                      ____________________________________________________________
consensus             GAAGCCTTACTCTTCGGTGCGGTATTGCGGAGCCGTCGGGGCAGCCGGCACCGATGGGCC
 
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JMSF002J15-           AGAAAACAAAGTACAAGGATGGGCTGTTTGAGAAGGCTTTCATGACTCTGTTTGCTCGGA
rJMSF002J15+                                                                  CGGA
                      ____________________________________________________________
consensus             AGAAAACAAAGTACAAGGATGGGCTGTTTGAGAAGGCTTTCATGACTCTGTTTGCTCGGA
 
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JMSF002J15-           AAATGGAGAAATTTGCGGATAAAAAAAAGGGTCCGCGGGAGAAAGGTTGGTTTGGGTATG
rJMSF002J15+          AAATGGAGAAATTTGCGGATAAAAAAAAGGGTCCGCGGGAGAAAGGTTGGTTTGGGTATG
                      ____________________________________________________________
consensus             AAATGGAGAAATTTGCGGATAAAAAAAAGGGTCCGCGGGAGAAAGGTTGGTTTGGGTATG
 
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JMSF002J15-           ACTATGAAAGCTTTGTGGATGTGTCGAG                                
rJMSF044I08+                                     GAAGAGTAATGCAAGGAAGGTCTCGGCCGCAGC
rJMSF002J15+          ACTATGAAAGCTTTGTGGATGTGTCGAGAAGAGTAATGCAAGGAAGGTCTCGGCCGCAGC
JMSF044I08-                                      GAAGAGTAATGCAAGGAAGGTCTCGGCCGCAGC
                      ____________________________________________________________
consensus             ACTATGAAAGCTTTGTGGATGTGTCGAGAAGAGTAATGCAAGGAAGGTCTCGGCCGCAGC
 
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rJMSF044I08+          AGCAAGAAGTGGTGCGTGAGGTGCTCCTGTCCATGCTTCCTCCCGGCGCTCCGGCACAGT
rJMSF002J15+          AGCAAGAAGTGGTGCGTGAGGTGCTCCTGTCCATGCTTCCTCCCGGCGCTCCGGCACAGT
JMSF044I08-           AGCAAGAAGTGGTGCGTGAGGTGCTCCTGTCCATGCTTCCTCCCGGCGCTCCGGCACAGT
                      ____________________________________________________________
consensus             AGCAAGAAGTGGTGCGTGAGGTGCTCCTGTCCATGCTTCCTCCCGGCGCTCCGGCACAGT
 
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rJMSF044I08+          TCAAAAAGTTGTTTCCTCCAACAAAATGGGCAGCAGAGTTCAATGCTGCAATAACAGTTC
rJMSF002J15+          TCAAAAAGTTGTTTCCTCCAACAAAATGGGCAGCAGAGTTCAATGCTGCAATAACAGTTC
JMSF044I08-           TCAAAAAGTTGTTTCCTCCAACAAAATGGGCAGCAGAGTTCAATGCTGCAATAACAGTTC
                      ____________________________________________________________
consensus             TCAAAAAGTTGTTTCCTCCAACAAAATGGGCAGCAGAGTTCAATGCTGCAATAACAGTTC
 
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rJMSF044I08+          CTTTCTTCTACTGGTTAGTTGGACCTTCCGAGGTTGTGGAAGTGGAGGTGAATGGAGTGA
rJMSF002J15+          CTTTCTTCTACTGGTTAGTTGGACCTTCCGAGGTTGTGGAAGTGGAGGTGAATGGAGTGA
JMSF044I08-           CTTTCTTCTACTGGTTAGTTGGACCTTCCGAGGTTGTGGAAGTGGAGGTGAATGGAGTGA
                      ____________________________________________________________
consensus             CTTTCTTCTACTGGTTAGTTGGACCTTCCGAGGTTGTGGAAGTGGAGGTGAATGGAGTGA
 
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rJMSF044I08+          AACAAAAGAGTGGAGTTCTTATAAAGAAATGCAGGTACTTGGAGAACAGTGGGTGTGTAG
rJMSF002J15+          AACAAAAGAGTGGAGTTCTTATAAAGAAATGCAGGTACTTGGAGAACAGTGGGTGTGTAG
JMSF044I08-           AACAAAAGAGTGGAGTTCTTATAAAGAAATGCAGGTACTTGGAGAACAGTGGGTGTGTAG
                      ____________________________________________________________
consensus             AACAAAAGAGTGGAGTTCTTATAAAGAAATGCAGGTACTTGGAGAACAGTGGGTGTGTAG
 
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rJMSF044I08+          GAATGTGTGTTAACATGTGCAAAATACCAACTCAAGACTTCTTCACCAACGAATTTGGAC
rJMSF002J15+          GAATGTGTGTTAACATGTGCAAAATACCAACTCAAGACTTCTTCACCAACGAATTTGGAC
JMSF044I08-           GAATGTGTGTTAACATGTGCAAAATACCAACTCAAGACTTCTTCACCAACGAATTTGGAC
                      ____________________________________________________________
consensus             GAATGTGTGTTAACATGTGCAAAATACCAACTCAAGACTTCTTCACCAACGAATTTGGAC
 
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rJMSF044I08+          TTCCATTAACTATGAATCCAAATTTTGAAGATATGAGTTGTGAGATGGTGTATGGCCAAC
rJMSF002J15+          TTCCATTAACTATGAATCCAAATTTTGAAGATATGAGTTGTGAGATGGTGTATGGCCAAC
JMSF044I08-           TTCCATTAACTATGAATCCAAATTTTGAAGATATGAGTTGTGAGATGGTGTATGGCCAAC
                      ____________________________________________________________
consensus             TTCCATTAACTATGAATCCAAATTTTGAAGATATGAGTTGTGAGATGGTGTATGGCCAAC
 
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rJMSF044I08+          CACCACCGCCGTATGAACAAGACCCGGTGGCCAAACAACCTTGTTTTGCTGACATATGCT
rJMSF002J15+          CACCACCGCCGTATGAACAAGACCCGGTGGCCAAACAACCTTGTTTTGCTGACATATGCT
JMSF044I08-           CACCACCGCCGTATGAACAAGACCCGGTGGCCAAACAACCTTGTTTTGCTGACATATGCT
                      ____________________________________________________________
consensus             CACCACCGCCGTATGAACAAGACCCGGTGGCCAAACAACCTTGTTTTGCTGACATATGCT
 
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rJMSF044I08+          CTATGGCGAAACCCAGTTCCAGTGTCTGCCATAAACTACAAGCTTAGCAATATGCTGTTA
rJMSF002J15+          CTATGGCGAAACCCAGTTCCAGTGTCTGCCATAAACTACAAGCTTAGCAATATGCTGTTA
JMSF044I08-           CTATGGCGAAACCCAGTTCCAGTGTCTGCCATAAACTACAAGCTTAGCAATATGCTGTTA
                      ____________________________________________________________
consensus             CTATGGCGAAACCCAGTTCCAGTGTCTGCCATAAACTACAAGCTTAGCAATATGCTGTTA
 
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rJMSF044I08+          TGCTTGCGATTCTGCTCTGGCCAGGAAGCTATACAGTTTACACAGTGTAAAGTATAAAAT
rJMSF002J15+          TGCTTGCGATTCTGCTCTGGCCAGGAAGCTATACAGTTTACACAGTGTAAAGTATAAAAT
JMSF044I08-           TGCTTGCGATTCTGCTCTGGCCAGGAAGCTATACAGTTTACACAGTGTAAAGTATAAAAT
                      ____________________________________________________________
consensus             TGCTTGCGATTCTGCTCTGGCCAGGAAGCTATACAGTTTACACAGTGTAAAGTATAAAAT
 
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rJMSF044I08+          ATTCTATTAGATATGAAATAGGATTGTATATGCAACAAAGATTTTTAAAGGAGAGACTAG
rJMSF002J15+          ATTCTATTAGATATGAAATAGGATTGTATATGCAACAAAGATTTTTAAAGGAGAGACTAG
JMSF044I08-           ATTCTATTAGATATGAAATAGGATTGTATATGCAACAAAGATTTTTAAAGGAGAGACTAG
                      ____________________________________________________________
consensus             ATTCTATTAGATATGAAATAGGATTGTATATGCAACAAAGATTTTTAAAGGAGAGACTAG
 
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rJMSF044I08+          AGAGTGAGAGAAGAAAGAT                                         
rJMSF002J15+          AGAGTGAGAGAAGAAAGATTGTGTATGCAAAAT                           
JMSF044I08-           AGAGTGAGAGAAGAAAGATTGTGTATGCAAAATTATAATCATGATAAAAATGTTGCTCTC
                      ____________________________________________________________
consensus             AGAGTGAGAGAAGAAAGATTGTGTATGCAAAATTATAATCATGATAAAAATGTTGCTCTC