Contig 006687:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019F12Sequence559006687 (2)ref|XP_009762757.1|2e-05PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Nicotiana sylvestris803004377 (2)ref|XP_006341855.1|7e-49PREDICTED: ubiquitin-like-specific protease 1D-like isoform X3 [Solanum tuberos
JMSF044D03Sequence686006687 (2)ref|XP_009762756.1|1e-12PREDICTED: ubiquitin-like-specific protease 1D isoform X1 [Nicotiana sylvestris756004377 (2)ref|XP_006341855.1|4e-41PREDICTED: ubiquitin-like-specific protease 1D-like isoform X3 [Solanum tuberos

Alignment

This contig is upended


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JMSF044D03+ TCTCCTTGGCGGAATCTTTCTTTTGG
                      ____________________________________________________________
consensus TCTCCTTGGCGGAATCTTTCTTTTGG
 
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JMSF044D03+ GTACCCTTTTGCTGTCACATGGATTTAGAGTACTCATTTCGCTTTCAAAGGCATTGCCCA
                      ____________________________________________________________
consensus GTACCCTTTTGCTGTCACATGGATTTAGAGTACTCATTTCGCTTTCAAAGGCATTGCCCA
 
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JMSF019F12+ CCAAATGAAGATTGTGAAT
JMSF044D03+ CCTTATGGTTTCCTGGTTCCAAACGCTTTGAAAAACAAGCACCAAATGAAGATTGTGAAT
                      ____________________________________________________________
consensus CCTTATGGTTTCCTGGTTCCAAACGCTTTGAAAAACAAGCACCAAATGAAGATTGTGAAT
 
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JMSF019F12+ TTGGTGTGGAAGATGATGGAGCCGGTTGCATGAAGCCATTAGATACACCTGCCCCAATGT
JMSF044D03+ TTGGTGTGGAAGATGATGGAGCCGGTTGCATGAAGCCATTAGATACACCTGCCCCAATGT
                      ____________________________________________________________
consensus TTGGTGTGGAAGATGATGGAGCCGGTTGCATGAAGCCATTAGATACACCTGCCCCAATGT
 
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JMSF019F12+ GGTCATGCCCTTCTTGTTTATCAACTTCCTTTCGGAGATGGTCACGTTGCCTCCTTTCCT
JMSF044D03+ GGTCATGCCCTTCTTGTTTATCAACTTCCTTTCGGAGATGGTCACGTTGCCTCCTTTCCT
                      ____________________________________________________________
consensus GGTCATGCCCTTCTTGTTTATCAACTTCCTTTCGGAGATGGTCACGTTGCCTCCTTTCCT
 
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JMSF019F12+ GTTCATTCNGGAGGCGCTTGATGAAGTGTCTCAGCTTCTCGCCACCATCGGGCAGACTTT
JMSF044D03+ GTTCATTCTGGAGGCGCTTGATGAAGTGTCTCAGCTTCTCGCCACCATCGGGCAGACTTT
                      ____________________________________________________________
consensus GTTCATTCTGGAGGCGCTTGATGAAGTGTCTCAGCTTCTCGCCACCATCGGGCAGACTTT
 
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JMSF019F12+ TGCTGGATAGCATTCTATTGGTCCTCGCAATCTTATTCACGAGCGTTTCATCCGACAATT
JMSF044D03+ TGCTGGATAGCATTCTATTGGTCCTCGCAATCTTATTCACGAGCGTTTCATCCGACAATT
                      ____________________________________________________________
consensus TGCTGGATAGCATTCTATTGGTCCTCGCAATCTTATTCACGAGCGTTTCATCCGACAATT
 
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JMSF019F12+ CCTGTAGGTCGTCCCTACGTTCATCGTCGTCCATCGCTGTTGACGGCGGTTTCGCCGCAG
JMSF044D03+ CCTGTAGGTCGTCCCTACGTTCATCGTCGTCCATCGCTGTTGACGGCGGTTTCGCCGCAG
                      ____________________________________________________________
consensus CCTGTAGGTCGTCCCTACGTTCATCGTCGTCCATCGCTGTTGACGGCGGTTTCGCCGCAG
 
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JMSF019F12+ CGGTGGAGACTACCACCAGCTCCGGCGGAGGCTCGTCTTCGCGGTCCCGTAATAACTCGT
JMSF044D03+ CGGTGGAGACTACCACCAGCTCCGGCGGAGGCTCGTCTTCGCGGTCCCGTAATAACTCGT
                      ____________________________________________________________
consensus CGGTGGAGACTACCACCAGCTCCGGCGGAGGCTCGTCTTCGCGGTCCCGTAATAACTCGT
 
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JMSF019F12+ CAATGTTAAGCGGTATGCCCCCCTTCTGCTTTCCTCACTTCCTCCCTCCATGCGTAGGGA
JMSF044D03+ CAATGTTAAGCGGTATGCCCCCCTTCTGCTTTCCTCACTTCCTCCCTCCATGCGTAGGGA
                      ____________________________________________________________
consensus CAATGTTAAGCGGTATGCCCCCCTTCTGCTTTCCTCACTTCCTCCCTCCATGCGTAGGGA
 
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JMSF019F12+ AGAATGTATATAGAGTCAAGCAGTGTGACGAATCCTCTGAGCTCTAATTTTCTGGGGAAG
JMSF044D03+ AGAATGTATATAGAGTCAAGCAGTGTGACGAATCCTCTGAGCTCTAATTTTCTGGGGAAG
                      ____________________________________________________________
consensus AGAATGTATATAGAGTCAAGCAGTGTGACGAATCCTCTGAGCTCTAATTTTCTGGGGAAG
 
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JMSF019F12+ AGAGAGAAAATGGAGGGGAAGCAAGAAAATACTCTGTACACTATTGCCAGGGATTCGATC
JMSF044D03+ AGAGAGAAAATGGAGGGGAAGCAAGAAAATACTCTGTACACTATTGCCAGGGATTCGATC
                      ____________________________________________________________
consensus AGAGAGAAAATGGAGGGGAAGCAAGAAAATACTCTGTACACTATTGCCAGGGATTCGATC