Contig 006687:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019F12Sequence559006687 (2)ref|XP_009762757.1|2e-05PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Nicotiana sylvestris803004377 (2)ref|XP_006341855.1|7e-49PREDICTED: ubiquitin-like-specific protease 1D-like isoform X3 [Solanum tuberos
JMSF044D03Sequence686006687 (2)ref|XP_009762756.1|1e-12PREDICTED: ubiquitin-like-specific protease 1D isoform X1 [Nicotiana sylvestris756004377 (2)ref|XP_006341855.1|4e-41PREDICTED: ubiquitin-like-specific protease 1D-like isoform X3 [Solanum tuberos

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044D03+                                             TCTCCTTGGCGGAATCTTTCTTTTGG
                      ____________________________________________________________
consensus                                               TCTCCTTGGCGGAATCTTTCTTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044D03+           GTACCCTTTTGCTGTCACATGGATTTAGAGTACTCATTTCGCTTTCAAAGGCATTGCCCA
                      ____________________________________________________________
consensus             GTACCCTTTTGCTGTCACATGGATTTAGAGTACTCATTTCGCTTTCAAAGGCATTGCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+                                                    CCAAATGAAGATTGTGAAT
JMSF044D03+           CCTTATGGTTTCCTGGTTCCAAACGCTTTGAAAAACAAGCACCAAATGAAGATTGTGAAT
                      ____________________________________________________________
consensus             CCTTATGGTTTCCTGGTTCCAAACGCTTTGAAAAACAAGCACCAAATGAAGATTGTGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           TTGGTGTGGAAGATGATGGAGCCGGTTGCATGAAGCCATTAGATACACCTGCCCCAATGT
JMSF044D03+           TTGGTGTGGAAGATGATGGAGCCGGTTGCATGAAGCCATTAGATACACCTGCCCCAATGT
                      ____________________________________________________________
consensus             TTGGTGTGGAAGATGATGGAGCCGGTTGCATGAAGCCATTAGATACACCTGCCCCAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           GGTCATGCCCTTCTTGTTTATCAACTTCCTTTCGGAGATGGTCACGTTGCCTCCTTTCCT
JMSF044D03+           GGTCATGCCCTTCTTGTTTATCAACTTCCTTTCGGAGATGGTCACGTTGCCTCCTTTCCT
                      ____________________________________________________________
consensus             GGTCATGCCCTTCTTGTTTATCAACTTCCTTTCGGAGATGGTCACGTTGCCTCCTTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           GTTCATTCNGGAGGCGCTTGATGAAGTGTCTCAGCTTCTCGCCACCATCGGGCAGACTTT
JMSF044D03+           GTTCATTCTGGAGGCGCTTGATGAAGTGTCTCAGCTTCTCGCCACCATCGGGCAGACTTT
                      ____________________________________________________________
consensus             GTTCATTCTGGAGGCGCTTGATGAAGTGTCTCAGCTTCTCGCCACCATCGGGCAGACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           TGCTGGATAGCATTCTATTGGTCCTCGCAATCTTATTCACGAGCGTTTCATCCGACAATT
JMSF044D03+           TGCTGGATAGCATTCTATTGGTCCTCGCAATCTTATTCACGAGCGTTTCATCCGACAATT
                      ____________________________________________________________
consensus             TGCTGGATAGCATTCTATTGGTCCTCGCAATCTTATTCACGAGCGTTTCATCCGACAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           CCTGTAGGTCGTCCCTACGTTCATCGTCGTCCATCGCTGTTGACGGCGGTTTCGCCGCAG
JMSF044D03+           CCTGTAGGTCGTCCCTACGTTCATCGTCGTCCATCGCTGTTGACGGCGGTTTCGCCGCAG
                      ____________________________________________________________
consensus             CCTGTAGGTCGTCCCTACGTTCATCGTCGTCCATCGCTGTTGACGGCGGTTTCGCCGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           CGGTGGAGACTACCACCAGCTCCGGCGGAGGCTCGTCTTCGCGGTCCCGTAATAACTCGT
JMSF044D03+           CGGTGGAGACTACCACCAGCTCCGGCGGAGGCTCGTCTTCGCGGTCCCGTAATAACTCGT
                      ____________________________________________________________
consensus             CGGTGGAGACTACCACCAGCTCCGGCGGAGGCTCGTCTTCGCGGTCCCGTAATAACTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           CAATGTTAAGCGGTATGCCCCCCTTCTGCTTTCCTCACTTCCTCCCTCCATGCGTAGGGA
JMSF044D03+           CAATGTTAAGCGGTATGCCCCCCTTCTGCTTTCCTCACTTCCTCCCTCCATGCGTAGGGA
                      ____________________________________________________________
consensus             CAATGTTAAGCGGTATGCCCCCCTTCTGCTTTCCTCACTTCCTCCCTCCATGCGTAGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           AGAATGTATATAGAGTCAAGCAGTGTGACGAATCCTCTGAGCTCTAATTTTCTGGGGAAG
JMSF044D03+           AGAATGTATATAGAGTCAAGCAGTGTGACGAATCCTCTGAGCTCTAATTTTCTGGGGAAG
                      ____________________________________________________________
consensus             AGAATGTATATAGAGTCAAGCAGTGTGACGAATCCTCTGAGCTCTAATTTTCTGGGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F12+           AGAGAGAAAATGGAGGGGAAGCAAGAAAATACTCTGTACACTATTGCCAGGGATTCGATC
JMSF044D03+           AGAGAGAAAATGGAGGGGAAGCAAGAAAATACTCTGTACACTATTGCCAGGGATTCGATC
                      ____________________________________________________________
consensus             AGAGAGAAAATGGAGGGGAAGCAAGAAAATACTCTGTACACTATTGCCAGGGATTCGATC