Contig 006686:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044B08Sequence605006686 (2)emb|CDP20511.1|4e-37unnamed protein product [Coffea canephora]560006686 (2)emb|CDP20511.1|2e-37unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF044B08+                                                                GGTCTG
JMSF044B08-                                                                 GGTCTG
                      ____________________________________________________________
consensus                                                                   GGTCTG
 
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rJMSF044B08+          GTTTATGATACCGGAATTGATGATTATGTGGATTTTTTATGTACCATTGGGTATGATAGC
JMSF044B08-           GTTTATGATACCGGAATTGATGATTATGTGGATTTTTTATGTACCATTGGGTATGATAGC
                      ____________________________________________________________
consensus             GTTTATGATACCGGAATTGATGATTATGTGGATTTTTTATGTACCATTGGGTATGATAGC
 
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rJMSF044B08+          CAGACAATTGCGTTGTTCCTGCGGGATGGTCCTCCGGTGGATTGCAGCACGCGAAATTTG
JMSF044B08-           CAGACAATTGCGTTGTTCCTGCGGGATGGTCCTCCGGTGGATTGCAGCACGCGAAATTTG
                      ____________________________________________________________
consensus             CAGACAATTGCGTTGTTCCTGCGGGATGGTCCTCCGGTGGATTGCAGCACGCGAAATTTG
 
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rJMSF044B08+          GGTAACCCCGGCTCTCTAAATTACCCTTCGTTTTCGGTTGTTTTAAAAAATAATCTCCTG
JMSF044B08-           GGTAACCCCGGCTCTCTAAATTACCCTTCGTTTTCGGTTGTTTTAAAAAATAATCTCCTG
                      ____________________________________________________________
consensus             GGTAACCCCGGCTCTCTAAATTACCCTTCGTTTTCGGTTGTTTTAAAAAATAATCTCCTG
 
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rJMSF044B08+          ACGGTAAAGTACAAGAGAACCGTTAAAAATGTGGGAACGGTCAAAAATGTTGTTTATGTG
JMSF044B08-           ACGGTAAAGTACAAGAGAACCGTTAAAAATGTGGGAACGGTCAAAAATGTTGTTTATGTG
                      ____________________________________________________________
consensus             ACGGTAAAGTACAAGAGAACCGTTAAAAATGTGGGAACGGTCAAAAATGTTGTTTATGTG
 
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rJMSF044B08+          GCACAAGGGAATATTTCTCCCCGAAATGCGGTGAATGTGAATGTGTCACCAAATAGGTTG
JMSF044B08-           GCACAAGGGAATATTTCTCCCCGAAATGCGGTGAATGTGAATGTGTCACCAAATAGGTTG
                      ____________________________________________________________
consensus             GCACAAGGGAATATTTCTCCCCGAAATGCGGTGAATGTGAATGTGTCACCAAATAGGTTG
 
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rJMSF044B08+          GAGTTTAGTGAAGGAAACGATATATTATCTTATGAGGTGACTTTTACAAGCGCTACACCA
JMSF044B08-           GAGTTTAGTGAAGGAAACGATATATTATCTTATGAGGTGACTTTTACAAGCGCTACACCA
                      ____________________________________________________________
consensus             GAGTTTAGTGAAGGAAACGATATATTATCTTATGAGGTGACTTTTACAAGCGCTACACCA
 
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rJMSF044B08+          ACTGATGCGGGGGCATACGGGTCATTAGTCTGGAGCGATGGGACACACATTGTTAGTAGC
JMSF044B08-           ACTGATGCGGGGGCATACGGGTCATTAGTCTGGAGCGATGGGACACACATTGTTAGTAGC
                      ____________________________________________________________
consensus             ACTGATGCGGGGGCATACGGGTCATTAGTCTGGAGCGATGGGACACACATTGTTAGTAGC
 
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rJMSF044B08+          CCAATAGCTGTGATGTGGCAAGGTGCCGCTTTGAAGTCTGAACTCTAAATGTATGGATGA
JMSF044B08-           CCAATAGCTGTGATGTGGCAAGGTGCCGCTTTGAAGTCTGAACTCTAAATGTATGGATGA
                      ____________________________________________________________
consensus             CCAATAGCTGTGATGTGGCAAGGTGCCGCTTTGAAGTCTGAACTCTAAATGTATGGATGA
 
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rJMSF044B08+          ATGTGCCTAGTTTGTTCCTANCGTAGCCCATGTAATAAAATAAATTATTATTATAGTGGA
JMSF044B08-           ATGTGCCTAGTTTGTTCCTA-CGTAGCCCATGTAATAAAATAAATTATTATTATAGTGGA
                      ____________________________________________________________
consensus             ATGTGCCTAGTTTGTTCCTANCGTAGCCCATGTAATAAAATAAATTATTATTATAGTGGA
 
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rJMSF044B08+          TATATCCACAAATA                                              
JMSF044B08-           TATATCCACAAATATATGTATGCAATAATATAATGGGCTTAGTTCCTTTCAAAAAAAAAA
                      ____________________________________________________________
consensus             TATATCCACAAATATATGTATGCAATAATATAATGGGCTTAGTTCCTTTCAAAAAAAAAA