Contig 006684:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036B11Sequence659006684 (3)ref|XP_011044648.1|1e-27PREDICTED: starch synthase 1, chloroplastic/amyloplastic isoform X2 [Populus eu733010073 (3)emb|CDP05054.1|1e-69unnamed protein product [Coffea canephora]
JMSF043P11Sequence716006684 (3)ref|XP_006350536.1|5e-38PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X602010073 (3)emb|CDP05054.1|6e-52unnamed protein product [Coffea canephora]
JMSF049E06Sequence668006684 (3)ref|XP_006350536.1|3e-29PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X760010073 (3)ref|XP_009624828.1|3e-98PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic isoform X4 [Ni

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF049E06+ CCATGACG
JMSF036B11+ CCATGACG
JMSF043P11+ TAAACTTTTCATCTGAAAGGGATCCATTCAAATATCTAGGGGAAACAACCATGACG
                      ____________________________________________________________
consensus TAAACTTTTCATCTGAAAGGGATCCATTCAAATATCTAGGGGAAACAACCATGACG
 
. : . : . : . : . : . :
JMSF049E06+ CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
JMSF036B11+ CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
JMSF043P11+ CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
                      ____________________________________________________________
consensus CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
 
. : . : . : . : . : . :
JMSF049E06+ GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
JMSF036B11+ GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
JMSF043P11+ GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
                      ____________________________________________________________
consensus GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
 
. : . : . : . : . : . :
JMSF049E06+ AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
JMSF036B11+ AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
JMSF043P11+ AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
                      ____________________________________________________________
consensus AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
 
. : . : . : . : . : . :
JMSF049E06+ TGAGATTCTGAAACTGTTTCATCACCTGTTACAGATTGAGGAATCAAGTGAAACCCAACA
JMSF036B11+ TGAGATTCTGAAACTGTTTCATCAC------CAGATTGAGGAATCAAGTGAAACCCAACA
JMSF043P11+ TGAGATTCTGAAACTGTTTCATCACCTGTTACAGATTGAGGAATCAAGTGAAACCCAACA
                      ____________________________________________________________
consensus TGAGATTCTGAAACTGTTTCATCACCTGTTACAGATTGAGGAATCAAGTGAAACCCAACA
 
. : . : . : . : . : . :
JMSF049E06+ ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
JMSF036B11+ ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
JMSF043P11+ ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
                      ____________________________________________________________
consensus ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
 
. : . : . : . : . : . :
JMSF049E06+ TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
JMSF036B11+ TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
JMSF043P11+ TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
                      ____________________________________________________________
consensus TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
 
. : . : . : . : . : . :
JMSF049E06+ CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
JMSF036B11+ CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
JMSF043P11+ CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
                      ____________________________________________________________
consensus CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
 
. : . : . : . : . : . :
JMSF049E06+ CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
JMSF036B11+ CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
JMSF043P11+ CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
                      ____________________________________________________________
consensus CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
 
. : . : . : . : . : . :
JMSF049E06+ GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
JMSF036B11+ GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
JMSF043P11+ GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
                      ____________________________________________________________
consensus GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
 
. : . : . : . : . : . :
JMSF049E06+ AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
JMSF036B11+ AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
JMSF043P11+ AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
                      ____________________________________________________________
consensus AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
 
. : . : . : . : . : . :
JMSF049E06+ GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACGAATGCACA
JMSF036B11+ GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACAAATGCACA
JMSF043P11+ GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACAAATGCACAGTGGTC
                      ____________________________________________________________
consensus GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACAAATGCACAGTGGTC