Contig 006684:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036B11Sequence659006684 (3)ref|XP_011044648.1|1e-27PREDICTED: starch synthase 1, chloroplastic/amyloplastic isoform X2 [Populus eu733010073 (3)emb|CDP05054.1|1e-69unnamed protein product [Coffea canephora]
JMSF043P11Sequence716006684 (3)ref|XP_006350536.1|5e-38PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X602010073 (3)emb|CDP05054.1|6e-52unnamed protein product [Coffea canephora]
JMSF049E06Sequence668006684 (3)ref|XP_006350536.1|3e-29PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X760010073 (3)ref|XP_009624828.1|3e-98PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic isoform X4 [Ni

Alignment

This contig is upended


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JMSF049E06+                                                               CCATGACG
JMSF036B11+                                                               CCATGACG
JMSF043P11+               TAAACTTTTCATCTGAAAGGGATCCATTCAAATATCTAGGGGAAACAACCATGACG
                      ____________________________________________________________
consensus                 TAAACTTTTCATCTGAAAGGGATCCATTCAAATATCTAGGGGAAACAACCATGACG
 
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JMSF049E06+           CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
JMSF036B11+           CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
JMSF043P11+           CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
                      ____________________________________________________________
consensus             CGATGTCCACGCTTAGCTAGTGCTATAGGCAAAGAGCCACAAACATCTCCCAACCCCCCT
 
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JMSF049E06+           GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
JMSF036B11+           GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
JMSF043P11+           GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
                      ____________________________________________________________
consensus             GTTTTAGAATATGGGGCAGCCTCAGAAGTAACAAAAACAACATTGAACACTGTTCTTTCC
 
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JMSF049E06+           AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
JMSF036B11+           AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
JMSF043P11+           AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
                      ____________________________________________________________
consensus             AAGGTTTCCACCTCACTTTCCAGTTCCTCAGTCACCTCACTATCACTATCTGCATCATCA
 
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JMSF049E06+           TGAGATTCTGAAACTGTTTCATCACCTGTTACAGATTGAGGAATCAAGTGAAACCCAACA
JMSF036B11+           TGAGATTCTGAAACTGTTTCATCAC------CAGATTGAGGAATCAAGTGAAACCCAACA
JMSF043P11+           TGAGATTCTGAAACTGTTTCATCACCTGTTACAGATTGAGGAATCAAGTGAAACCCAACA
                      ____________________________________________________________
consensus             TGAGATTCTGAAACTGTTTCATCACCTGTTACAGATTGAGGAATCAAGTGAAACCCAACA
 
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JMSF049E06+           ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
JMSF036B11+           ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
JMSF043P11+           ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
                      ____________________________________________________________
consensus             ACAGAGCCGGAGCCATCCCTCTGTGCTCCCAACAAAAGACCCTTCTCCTGTTCTTTTCTG
 
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JMSF049E06+           TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
JMSF036B11+           TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
JMSF043P11+           TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
                      ____________________________________________________________
consensus             TCATCTTCAGCTACAGAGGACCCATCTTCTTGAGAACCATTTCTTGCAGTACTATACAGC
 
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JMSF049E06+           CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
JMSF036B11+           CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
JMSF043P11+           CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
                      ____________________________________________________________
consensus             CTCCCAACCTTCAAAGATCGGATTTTTATGCTTCCTTGCCTCGCCCACAAACAAGAAAGA
 
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JMSF049E06+           CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
JMSF036B11+           CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
JMSF043P11+           CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
                      ____________________________________________________________
consensus             CTCACTTGCCCAAACACACTACATTTCCGACGAAAGCACAAAGACGCCGACGCCGACGAC
 
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JMSF049E06+           GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
JMSF036B11+           GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
JMSF043P11+           GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
                      ____________________________________________________________
consensus             GACGGCGGCCTGCAGCAAAGCATTCTCGAGGCCCACAGAGCCTCCATGGGAGAGTTTTAG
 
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JMSF049E06+           AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
JMSF036B11+           AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
JMSF043P11+           AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
                      ____________________________________________________________
consensus             AGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGATAGATAAACGGTTAGACGTAAAGGATC
 
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JMSF049E06+           GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACGAATGCACA      
JMSF036B11+           GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACAAATGCACA      
JMSF043P11+           GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACAAATGCACAGTGGTC
                      ____________________________________________________________
consensus             GCGAGACAAAAAGGAAAAGAGAGAGCGAGAGACATGGGAGAATACAAATGCACAGTGGTC