Contig 006679:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043H13Sequence613006679 (2)ref|XP_010027764.1|3e-87PREDICTED: DNA-directed RNA polymerase II subunit 4 [Eucalyptus grandis] ref|XP566006679 (2)ref|XP_010027764.1|2e-82PREDICTED: DNA-directed RNA polymerase II subunit 4 [Eucalyptus grandis] ref|XP

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+                                                         GAAGTGCGAAACA
JMSF043H13-                                                          GAAGTGCGAAACA
                      ____________________________________________________________
consensus                                                            GAAGTGCGAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          TAAGAGGAGAACGCCGCGGTTTATATAACGCTTTTTCTCGCCNCAATGTCAGTAGAAGAG
JMSF043H13-           TAAGAGGAGAACGCCGCGGTTTATATAACGCTTTTTCTCGCCACAATGTCAGTAGAAGAG
                      ____________________________________________________________
consensus             TAAGAGGAGAACGCCGCGGTTTATATAACGCTTTTTCTCGCCACAATGTCAGTAGAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          GAGGAGAACGCTGCGGAGCTTAAAATCGGAGATGAATTTCTCAAGGCGAAGTGTNTGATG
JMSF043H13-           GAGGAGAACGCTGCGGAGCTTAAAATCGGAGATGAATTTCTCAAGGCGAAGTGTCTGATG
                      ____________________________________________________________
consensus             GAGGAGAACGCTGCGGAGCTTAAAATCGGAGATGAATTTCTCAAGGCGAAGTGTCTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          AACTGTGAGGTTTCTTTGATTCTTGAACACAAGTATGAGCAGATTCAGCAGATGTNTGAG
JMSF043H13-           AACTGTGAGGTTTCTTTGATTCTTGAACACAAGTATGAGCAGATTCAGCAGATGTCTGAG
                      ____________________________________________________________
consensus             AACTGTGAGGTTTCTTTGATTCTTGAACACAAGTATGAGCAGATTCAGCAGATGTCTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          GATCCAACAAATCAAGTTTCCCAAGTGTTTGAGAAGTCACTTCAATACGTGAAGCGTTTC
JMSF043H13-           GATCCAACAAATCAAGTTTCCCAAGTGTTTGAGAAGTCACTTCAATACGTGAAGCGTTTC
                      ____________________________________________________________
consensus             GATCCAACAAATCAAGTTTCCCAAGTGTTTGAGAAGTCACTTCAATACGTGAAGCGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          AGCCGGTACAAGAACCCTGATGCTGTGAGACAAGTTCGNGAAATCCTGAGTAGATATAAG
JMSF043H13-           AGCCGGTACAAGAACCCTGATGCTGTGAGACAAGTTCGAGAAATCCTGAGTAGATATAAG
                      ____________________________________________________________
consensus             AGCCGGTACAAGAACCCTGATGCTGTGAGACAAGTTCGAGAAATCCTGAGTAGATATAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          CTTGNTGAATTCGAGCTTTGTGTTNTGGGAAACCTTTGCCCAGAAACCGTTGAGGAAGCG
JMSF043H13-           CTTGCTGAATTCGAGCTTTGTGTTCTGGGAAACCTTTGCCCAGAAACCGTTGAGGAAGCG
                      ____________________________________________________________
consensus             CTTGCTGAATTCGAGCTTTGTGTTCTGGGAAACCTTTGCCCAGAAACCGTTGAGGAAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          ATTGCCATGGTCCCATCCATTAAGAACAGAGGGCGTGCCCTGGACGATGAGGCAATTGAG
JMSF043H13-           ATTGCCATGGTCCCATCCATTAAGAACAGAGGGCGTGCACTGGACGATGAGGCAATTGAG
                      ____________________________________________________________
consensus             ATTGCCATGGTCCCATCCATTAAGAACAGAGGGCGTGCCCTGGACGATGAGGCAATTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          AAGATGCTAAATGACCTCTCATTGATAAAGAAATTTGAGTAGAGCNCCTTCTCCATTTTT
JMSF043H13-           AAGATGCTAAATGACCTCTCATTGATAAAGAAATTTGAGTAGAGCACCTTCTCCATTTTT
                      ____________________________________________________________
consensus             AAGATGCTAAATGACCTCTCATTGATAAAGAAATTTGAGTAGAGCACCTTCTCCATTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          TTCAGTTGGTTTGCCATATTTTAGACNGTACCTCTCATTTTAAATGTTCATTGTGTAAGG
JMSF043H13-           TTCAGTTGGTTTGCCATATTTTAGACTGTACCTCTCATTTTAAATGTTCATTGTGTAAGG
                      ____________________________________________________________
consensus             TTCAGTTGGTTTGCCATATTTTAGACTGTACCTCTCATTTTAAATGTTCATTGTGTAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043H13+          TTTC                                                        
JMSF043H13-           TTTCACAGTATTTTATTAGAATTAGCTTTATGAATTTTAAAAAAAAAAATAAAAAAAAAA
                      ____________________________________________________________
consensus             TTTCACAGTATTTTATTAGAATTAGCTTTATGAATTTTAAAAAAAAAAATAAAAAAAAAA