| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012A11 | Sequence | 511 | 006676 (7) | 725 | 001416 (7) | ref|XP_002310798.2| | 7e-96 | hypothetical protein POPTR_0007s12510g [Populus trichocarpa] gb|EEE91248.2| hypo | |||
| JMSF025G06 | Sequence | 640 | 006676 (7) | emb|CDP02816.1| | 5e-10 | unnamed protein product [Coffea canephora] | 761 | 001416 (7) | ref|XP_011025730.1| | 3e-96 | PREDICTED: probable protein phosphatase 2C 80 [Populus euphratica] ref|XP_011025 |
| JMSF030E17 | Sequence | 666 | 006676 (7) | emb|CDP02816.1| | 1e-12 | unnamed protein product [Coffea canephora] | 738 | 001416 (7) | ref|XP_002310798.2| | 1e-96 | hypothetical protein POPTR_0007s12510g [Populus trichocarpa] gb|EEE91248.2| hypo |
| JMSF032K06 | Sequence | 685 | 006676 (7) | emb|CDP02816.1| | 1e-12 | unnamed protein product [Coffea canephora] | 725 | 001416 (7) | ref|XP_002310798.2| | 9e-97 | hypothetical protein POPTR_0007s12510g [Populus trichocarpa] gb|EEE91248.2| hypo |
| JMSF033K06 | Sequence | 638 | 006676 (7) | emb|CDP02816.1| | 1e-12 | unnamed protein product [Coffea canephora] | 510 | 001416 (7) | ref|XP_011025730.1| | 2e-69 | PREDICTED: probable protein phosphatase 2C 80 [Populus euphratica] ref|XP_011025 |
| JMSF041K10 | Sequence | 727 | 006676 (7) | emb|CDP02816.1| | 1e-12 | unnamed protein product [Coffea canephora] | 803 | 001416 (7) | ref|XP_002310798.2| | 8e-100 | hypothetical protein POPTR_0007s12510g [Populus trichocarpa] gb|EEE91248.2| hypo |
| JMSF043B08 | Sequence | 545 | 006676 (7) | 714 | 001416 (7) | ref|XP_002310798.2| | 8e-97 | hypothetical protein POPTR_0007s12510g [Populus trichocarpa] gb|EEE91248.2| hypo | |||
This contig is upended
. : . : . : . : . : . :
JMSF041K10+ CCTCGTCTGGTTACCAGACTTGAGTTGGAAGACCTTCCTGTGA
____________________________________________________________
consensus CCTCGTCTGGTTACCAGACTTGAGTTGGAAGACCTTCCTGTGA
. : . : . : . : . : . :
JMSF041K10+ TGTCAAATATGAAATAACCATGAACTATAGGAGCCATTTTCACTTCCTTATGCTGCACAC
JMSF033K06+ TGCTGCACAC
JMSF032K06+ CAAATATGAAATANCCATGAACTATAGGAGCCATTTTCACTTCCTTATGCTGCACAC
JMSF030E17+ TGCTGCACAC
____________________________________________________________
consensus TGTCAAATATGAAATAACCATGAACTATAGGAGCCATTTTCACTTCCTTATGCTGCACAC
. : . : . : . : . : . :
JMSF041K10+ TCACGCACGTTTTCCAACAATTCCTACAACTTCTATCACCAAAATGGATACTGGCAGGGT
JMSF033K06+ TCACGCACGTTTTCCAACAATTCCTACAACTTCTATCACCAAAATGGATACTGGCAGGGT
JMSF032K06+ TCACGCACGTTTTCCAACAATTCCTACAACTTCTATCACCAAAATGGATACTGGCAGGGT
JMSF030E17+ TCACGCACGTTTTCCAACAATTCCTACAACTTCTATCACCAAAATGGATACTGGCAGGGT
JMSF025G06+ TTCCTACAACTTCTATCACCAAAATGGATACTGGCAGGGT
____________________________________________________________
consensus TCACGCACGTTTTCCAACAATTCCTACAACTTCTATCACCAAAATGGATACTGGCAGGGT
. : . : . : . : . : . :
JMSF041K10+ TTGCAAAGCTTGAGACATTCCCACTGCTCGAGATTAAGCCACCCAACGCGAAATCCCCTG
JMSF033K06+ TTGCAAAGCTTGAGACATTCCCACTGCTCGAGATTAAGCCACCCAACGCGAAATCCCCTG
JMFF012A11+ CCTG
JMSF032K06+ TTGCAAAGCTTGAGACATTCCCACTGCTCGAGATTAAGCCACCCAACGCGAAATCCCCTG
JMSF030E17+ TTGCAAAGCTTGAGACATTCCCACTGCTCGAGATTAAGCCACCCAACGCGAAATCCCCTG
JMSF025G06+ TTGCAAAGCTTGAGACATTCCCACTGCTCGAGATTAAGCCACCCAACGCGAAATCCCCTG
JMSF043B08+ CCCTG
____________________________________________________________
consensus TTGCAAAGCTTGAGACATTCCCACTGCTCGAGATTAAGCCACCCAACGCGAAATCCCCTG
. : . : . : . : . : . :
JMSF041K10+ GGGCAGCTGTAGAACCAGAAGCAGCCATAATTCTCGGATTACAAAGATAAGTTGAATATC
JMSF033K06+ GGGCAGCTGTAGAACCAGAAGCAGCCATAATTCTCGGATTACAAAGATAAGTTGAATATC
JMFF012A11+ GGGCAGCTGTAGAACCAGAAGCAGCCATAATTCTCGGATTACAAAGATAAGTTGAATATC
JMSF032K06+ GGGCAGCTGTAGAACCAGAAGCAGCCATAATTCTCGGATTACAAAGATAAGTTGAATATC
JMSF030E17+ GGGCAGCTGTAGAACCAGAAGCAGCCATAATTCTCGGATTACAAAGATAAGTTGAATATC
JMSF025G06+ GGGCAGCTGTAGAACCAGAAGCAGCCATAATTCTCGGATTACAAAGATAAGTTGAATATC
JMSF043B08+ GGGCAGCNGTAGAACCAGAAGCAGCCATAATTCTCGGATTNCAAAGATAAGTTGAATATC
____________________________________________________________
consensus GGGCAGCTGTAGAACCAGAAGCAGCCATAATTCTCGGATTACAAAGATAAGTTGAATATC
. : . : . : . : . : . :
JMSF041K10+ CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
JMSF033K06+ CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
JMFF012A11+ CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
JMSF032K06+ CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
JMSF030E17+ CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
JMSF025G06+ CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
JMSF043B08+ CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
____________________________________________________________
consensus CAGAAAAGCGGCTAGTTGAGTCTCCTAGAATAGCACTGGAATGCTGGAGCACCCCAATGG
. : . : . : . : . : . :
JMSF041K10+ CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
JMSF033K06+ CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
JMFF012A11+ CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
JMSF032K06+ CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
JMSF030E17+ CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
JMSF025G06+ CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
JMSF043B08+ CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
____________________________________________________________
consensus CAAAGCTCTTGCTTCTGCAACTCCCAAGATAATTACTCCTTATAGGCAGAGCTTGAGTTA
. : . : . : . : . : . :
JMSF041K10+ GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
JMSF033K06+ GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
JMFF012A11+ GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
JMSF032K06+ GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
JMSF030E17+ GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
JMSF025G06+ GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
JMSF043B08+ GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
____________________________________________________________
consensus GTTTATATCTCCCAATTTGTTTTGCACTCACAGCCTTTTGAACGCCAAAAGTGAATGAAG
. : . : . : . : . : . :
JMSF041K10+ AGTTCAGACTTGAAAGCAAAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
JMSF033K06+ AGTTCAGACTTGAAAGCAAAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
JMFF012A11+ AGTTCAGACTTGAAAGCAAAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
JMSF032K06+ AGTTCAGACTTGAAAGCAAAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
JMSF030E17+ AGTTCAGACTTGAAAGCAAAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
JMSF025G06+ AGTTCAGACTTGAAAGCAGAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
JMSF043B08+ AGTTCAGACTTGAAAGCAGAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
____________________________________________________________
consensus AGTTCAGACTTGAAAGCAAAGCAGACGGCATCTTTTTCCCTTAAACTTAACAACTCCAGA
. : . : . : . : . : . :
JMSF041K10+ AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
JMSF033K06+ AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
JMFF012A11+ AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
JMSF032K06+ AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
JMSF030E17+ AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
JMSF025G06+ AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
JMSF043B08+ AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
____________________________________________________________
consensus AATCCAATAAAACCAGAACGTTAAATGGCATTACTCTCTCAATTCATAATAGGGTTCACA
. : . : . : . : . : . :
JMSF041K10+ ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
JMSF033K06+ ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
JMFF012A11+ ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
JMSF032K06+ ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
JMSF030E17+ ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
JMSF025G06+ ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
JMSF043B08+ ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
____________________________________________________________
consensus ACCACCTGATAACGCAATCCTGTAGAAACCAAATGTTCAGTTCAGGTAGGTATAGGTTGT
. : . : . : . : . : . :
JMSF041K10+ TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
JMSF033K06+ TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
JMFF012A11+ TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
JMSF032K06+ TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
JMSF030E17+ TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
JMSF025G06+ TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
JMSF043B08+ TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
____________________________________________________________
consensus TTAATATAGAGGAAAATGAGATAAACTCCAAAGCTTATCCATGGAGTTCTTCGTCACACT
. : . : . : . : . : . :
JMSF041K10+ GTGCCGCCTCCCCAGAGAATAAC
JMSF033K06+ GTGCCGCCTCCCCAGAGAATAACGAAT
JMFF012A11+ GTGCCGCCTCCCCAGAGAATAACGAAT
JMSF032K06+ GTGCCGCCTCCCCAGAGAATAACGAAT
JMSF030E17+ GTGCCGCCTCCCCAGAGAATAACGAATGAACAAGAATGATGAAAATGGCTAGG
JMSF025G06+ GTGCCGCCTCCCCAGAGAATAACGAATGAACAAGAATGATGAAAATGGCTAGG
JMSF043B08+ GTGCCGCCTCCCCAGAGAATAACGAATGAACAAGAATGATGAAAATGGCTAGGCCAAGTC
____________________________________________________________
consensus GTGCCGCCTCCCCAGAGAATAACGAATGAACAAGAATGATGAAAATGGCTAGGCCAAGTC