Contig 006669:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042D11-                                                     ACAACAACCTTTCCGCA
                      ____________________________________________________________
consensus                                                        ACAACAACCTTTCCGCA
 
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rJMSF042D11-          TGGTTGTAAACATGCCTTGTTCAAATACCAAACTCAAGTTGCCACAAAGAGGTACTTAGT
                      ____________________________________________________________
consensus             TGGTTGTAAACATGCCTTGTTCAAATACCAAACTCAAGTTGCCACAAAGAGGTACTTAGT
 
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rJMFF007N07-              GATGAAGAAGTAATGCATTATCCACAATTAGTTACATCAACTGTCAAGGGCCGTGA
rJMSF042D11-          ACCAGATGAAGAAGTAATGCATTATCCACAATTAGTTACATCAACTGTCAAGGGCCGTGA
                      ____________________________________________________________
consensus             ACCAGATGAAGAAGTAATGCATTATCCACAATTAGTTACATCAACTGTCAAGGGCCGTGA
 
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rJMFF007N07-          AAACACCAATTACAAAAACAGGGCATTTGCATGTATCAGCACTTCCTAAACTATTCAGGT
rJMSF042D11-          AAACACCAATTACAAAAACAGGGCATTTGCATGTATCAGCACTTCCTAAACTATTCAGGT
                      ____________________________________________________________
consensus             AAACACCAATTACAAAAACAGGGCATTTGCATGTATCAGCACTTCCTAAACTATTCAGGT
 
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rJMFF007N07-          GAATGGGCAGTCGATTGCACTCAACTTCTTGTTCACGACACCCGCGGTATGTAGAAGCTA
rJMSF042D11-          GAATGGGCAGTCGATTGCACTCAACTTCTTGTTCACGACACCCGCGGTATGTAGAAGCTA
                      ____________________________________________________________
consensus             GAATGGGCAGTCGATTGCACTCAACTTCTTGTTCACGACACCCGCGGTATGTAGAAGCTA
 
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rJMFF007N07-          AATTCCCTTACAACTACTGAATCTTCTTTTCTTTGTTTAGATTCCCAGGGATCTTTTTCA
rJMSF042D11-          AATTCCCTTACAACTACTGAATCTTCTTTTCTTTGTTTAGATTCCCAGGGATCTTTTTCA
JMSF042D11+                                         CTTTGTTTAGATTCCCAGGGATCTTTTTCA
                      ____________________________________________________________
consensus             AATTCCCTTACAACTACTGAATCTTCTTTTCTTTGTTTAGATTCCCAGGGATCTTTTTCA
 
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rJMFF007N07-          AAATTGCATCATCAATTTTCTTATACTGTGATAGGATGATGTTATGTGCCAAAATCAGCT
rJMSF042D11-          AAATTGCATCATCAATTTTCTTATACTGTGATAGGATGATGTTATGTGCCAAAATCAGCT
JMSF042D11+           AAATTGCATCATCAATTTTCTTATACTGTGATAGGATGATGTTATGTGCCAAAATCAGCT
                      ____________________________________________________________
consensus             AAATTGCATCATCAATTTTCTTATACTGTGATAGGATGATGTTATGTGCCAAAATCAGCT
 
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rJMFF007N07-          TATCATCAATTTGGTCTTGGTATTTCTCATATAATGGAGGTATTGCTAGACTGAAAAGAA
rJMSF042D11-          TATCATCAATTTGGTCTTGGTATTTCTCATATAATGGAGGTATTGCTAGACTGAAAAGAA
JMSF042D11+           TATCATCAATTTGGTCTTGGTATTTCTCATATAATGGAGGTATTGCTAGACTGAAAAGAA
                      ____________________________________________________________
consensus             TATCATCAATTTGGTCTTGGTATTTCTCATATAATGGAGGTATTGCTAGACTGAAAAGAA
 
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rJMFF007N07-          CCCCCAAGTAGACCAGAGTCAGAAAGTTGAAGAAGCTTCCAACATACGATATCACCCACA
rJMSF042D11-          CCCCCAAGTAGACCAGAGTCAGAAAGTTGAAGAAGCTTCCAACATACGATATCACCCACA
JMFF007N07+                        CAGAGTCAGAAAGTTGAAGAAGCTTCCAACATACGATATCNCCCACA
JMSF042D11+           CCCCCAAGTAGACCAGAGTCNGAAAGTTGAAGAAGCTTCCAACATACGATATCACCCACA
                      ____________________________________________________________
consensus             CCCCCAAGTAGACCAGAGTCAGAAAGTTGAAGAAGCTTCCAACATACGATATCACCCACA
 
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rJMFF007N07-          AACCAAAAGCAACCTGAACAAAGAGCCTAATGTTCCCTCCAATAGCAATGTCATGTGCAA
rJMSF042D11-          AACCAAAAGCAACCTGAACAAAGAGCCTAATGTTCCCTCCAATAGCAATGTCATGTGCAA
JMFF007N07+           AACCAAAAGCAACCTGAACAAAGAGCNTAATGTTCCCTCCAATAGCAATGTCATGTGCAA
JMSF042D11+           AACCAAAAGCAACCTGAACAAAGAGCCTAATGTTCCCTCCAATAGCAATGTCATGTGCAA
                      ____________________________________________________________
consensus             AACCAAAAGCAACCTGAACAAAGAGCCTAATGTTCCCTCCAATAGCAATGTCATGTGCAA
 
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rJMFF007N07-          TCGTGAGTACATGGTTAACCCAAACACGCATCACTTCGCCAGCATTTGCAATGAATTCCT
rJMSF042D11-          TCGTGAGTACATGGTTAACCCAAACACGCATCACTTCGCCAGCATTTGCAATGAATTCCT
JMFF007N07+           TCGTGAGTACATGGTTAACCCAAACACGCATCACTTCGCCAGCATTTGCAATGAATTCCT
JMSF042D11+           TCGTGAGTACATGGTTAACCCAAACACGCATCACTTCGCCAGCATTTGCAATGAATTCCT
                      ____________________________________________________________
consensus             TCGTGAGTACATGGTTAACCCAAACACGCATCACTTCGCCAGCATTTGCAATGAATTCCT
 
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rJMFF007N07-          CCGAAACCTCCATATCAGGAAGGGGAGGTAGAGGTCTGTTGAGAAGTGATGCAGATTTAG
rJMSF042D11-          CCGAAACCTCCATATCAGGAAGGGGAGGTAGAGGTCTGTTGAGAAGTGATGCAGATTTAG
JMFF007N07+           CCGAAACCTCCATATCAGGAAGGGGAGGTAGAGGTCTGTTGAGAAGTGATGCAGATTTAG
JMSF042D11+           CCGAAACCTCCATATCAGGAAGGGGAGGTAGAGGTCTGTTGAGAAGTGATGCAGATTTAG
                      ____________________________________________________________
consensus             CCGAAACCTCCATATCAGGAAGGGGAGGTAGAGGTCTGTTGAGAAGTGATGCAGATTTAG
 
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rJMFF007N07-          CCCAGAAAAAGAGAATTAAAACTAGAAGCAATAGCACATTGGCGATGAACGACAGTAGAT
rJMSF042D11-          CCCAGAAAAAGAGAATTAAAACTAGAAGCAATAGCACATTGGCGATGAACGACAGTAGAT
JMFF007N07+           CCCAGAAAAAGAGAATTAAAACTAGAAGCAATAGCACANTGGCGATGAACGACAGTAGAT
JMSF042D11+           CCCAGAAAAAGAGAATTAAAACTAGAAGCAATAGCACATTGGCGATGAACGACAGTAGAT
                      ____________________________________________________________
consensus             CCCAGAAAAAGAGAATTAAAACTAGAAGCAATAGCACATTGGCGATGAACGACAGTAGAT
 
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rJMFF007N07-          TATAGCCGGCTCGTTCA                                           
rJMSF042D11-          TATAGCCGGCTCGTTCA                                           
JMFF007N07+           TATAGCCGGCTCGTTCAAATAGGAACCAAAGGAAAGTGGAACCTACAAGCACGGTGACGC
JMSF042D11+           TATAGCCGGCTCGTTCAAATAGGAACCAAAGGAAAGTGGAACCTACAAGCACGGTGACGC
                      ____________________________________________________________
consensus             TATAGCCGGCTCGTTCAAATAGGAACCAAAGGAAAGTGGAACCTACAAGCACGGTGACGC
 
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JMFF007N07+           TCCCATACCATCTTTTCCACAGCAACACATCCGCAACTGCGCCACCGCCGAGAGCGTGAT
JMSF042D11+           TCCCATACCATCTTTTCCACAGCAACACATCCGCAACTGCGCCACCGCCGAGAGCGTGAT
                      ____________________________________________________________
consensus             TCCCATACCATCTTTTCCACAGCAACACATCCGCAACTGCGCCACCGCCGAGAGCGTGAT
 
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JMFF007N07+           GGACGAATGACTGACGAGATTCTACCATGGCGATTAGGGTTTCTGATCGGATGAATCGAA
JMSF042D11+           GGACGAATGACTGACGAGATTCTACCATGGCGATTAGGGTTTNTGATCGGATGAATCGAA
                      ____________________________________________________________
consensus             GGACGAATGACTGACGAGATTCTACCATGGCGATTAGGGTTTCTGATCGGATGAATCGAA
 
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JMFF007N07+           GATGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGGTTGGAGAATCTTCAAGGAA  
JMSF042D11+           GATGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGGTTGGAGAATCTTCAAGGAATC
                      ____________________________________________________________
consensus             GATGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGGTTGGAGAATCTTCAAGGAATC