| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032L06 | Sequence | 568 | 006663 (4) | emb|CDO97607.1| | 2e-73 | unnamed protein product [Coffea canephora] | 741 | 014074 (4) | ref|XP_009588823.1| | 1e-11 | PREDICTED: zinc finger CCCH domain-containing protein 49-like [Nicotiana toment |
| JMSF008L09 | Sequence | 480 | 006663 (4) | ref|XP_008779264.1| | 8e-74 | PREDICTED: zinc finger CCCH domain-containing protein 40 [Phoenix dactylifera] | 755 | 001367 (3) | emb|CDO97607.1| | 2e-39 | unnamed protein product [Coffea canephora] |
| JMSF025B20 | Sequence | 617 | 006663 (4) | emb|CDO97607.1| | 2e-83 | unnamed protein product [Coffea canephora] | 784 | 014074 (4) | ref|XP_002280897.1| | 2e-11 | PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera] |
| JMSF041N04 | Sequence | 780 | 006663 (4) | emb|CDO97607.1| | 2e-122 | unnamed protein product [Coffea canephora] | 609 | 014074 (4) | ref|XP_007201008.1| | 7e-05 | hypothetical protein PRUPE_ppa005371mg [Prunus persica] gb|EMJ02207.1| hypotheti |
This contig is upended
. : . : . : . : . : . :
JMSF041N04+ TCTTGTACATTGACCCCGAACATAAAAACTGCAAACATGAGCTCGATTTCTCTTGTAGTA
____________________________________________________________
consensus TCTTGTACATTGACCCCGAACATAAAAACTGCAAACATGAGCTCGATTTCTCTTGTAGTA
. : . : . : . : . : . :
JMSF041N04+ TGGGGTAGTTCGTTGAAGCTTCAAAATAGTATCATTTGGACGGACCTTCCCATACGAAGA
____________________________________________________________
consensus TGGGGTAGTTCGTTGAAGCTTCAAAATAGTATCATTTGGACGGACCTTCCCATACGAAGA
. : . : . : . : . : . :
JMSF025B20+ CTGCGGTCATGCTCCTCAGCAAAGTATTCTCTATT
JMSF041N04+ TTCATAATCTATCCCGGCTCTGGCCCTGCGGTCATGCTCCTCAGCAAAGTATTCTCTATT
____________________________________________________________
consensus TTCATAATCTATCCCGGCTCTGGCCCTGCGGTCATGCTCCTCAGCAAAGTATTCTCTATT
. : . : . : . : . : . :
JMFF032L06+ ACATCACTCTTTGGAATGGCATCATTGGAATTGATACTAAGCGCAGTGTCTCGAACCTG
JMSF025B20+ CACATCACTCTTTGGAATGGCATCATTGGAATTGATACTAAGCGCAGTGTCTCGAACCTG
JMSF008L09+ ACATCACTCTTCGGAATGGCATCATNGGAATTGATACTAAGAGCGGTGTCTCGGACCTG
JMSF041N04+ CACATCACTCTTTGGAATGGCATCATTGGAATTGATACTAAGCGCAGTGTCTCGAACCTG
____________________________________________________________
consensus CACATCACTCTTTGGAATGGCATCATTGGAATTGATACTAAGCGCAGTGTCTCGAACCTG
. : . : . : . : . : . :
JMFF032L06+ AACTGGCAATCCATATTCAAGATCCAGAAGACAAACTTGGCAAACATTCTTCAACTTGCT
JMSF025B20+ AACTGGCAATCCATATTCAAGATCCAGAAGACAAACTTGGCAAACATTCTTCAACTTGCT
JMSF008L09+ AACAGGTAACCCATATTCAAGATCAAGAAGACAAACTTGACAAACGTTCTTCAACTTGCA
JMSF041N04+ AACTGGCAATCCATATTCAAGATCCAGAAGACAAACTTGGCAAACATTCTTCAACTTGCT
____________________________________________________________
consensus AACTGGCAATCCATATTCAAGATCCAGAAGACAAACTTGGCAAACATTCTTCAACTTGCT
. : . : . : . : . : . :
JMFF032L06+ GCAGGTTTGACATATCTCAGATTTCTTGTATCTAGCATCTCGACCTGGCCTCCACCTAAA
JMSF025B20+ GCAGGTTTGACATATCTCAGATTTCTTGTATCTAGCATCTCGACCTGGCCTCCACCTAAA
JMSF008L09+ GCACGTCTGACAGATCTCAGTTTTCTTGTACCTCGCATCCCGACCAGGCCTCCACCTGAA
JMSF041N04+ GCAGGTTTGACATATCTCAGATTTCTTGTATCTAGCATCTCGACCTGGCCTCCACCTAAA
____________________________________________________________
consensus GCAGGTTTGACATATCTCAGATTTCTTGTATCTAGCATCTCGACCTGGCCTCCACCTAAA
. : . : . : . : . : . :
JMFF032L06+ AACAGTGAAGGGTCGGGTGCAAATCTTGCATTCCTTGTCATAATCAGCTTTAGTCATTCG
JMSF025B20+ AACAGTGAAGGGTCGGGTGCAAATCTTGCATTCCTTGTCATAATCAGCTTTAGTCATTCG
JMSF008L09+ AACAGTGAAGGGTCTTGTACAAATCTTGCATTCCTTGTCATAATCAGCTTTACTCATCCG
JMSF041N04+ AACAGTGAAGGGTCGGGTGCAAATCTTGCATTCCTTGTCATAATCAGCTTTAGTCATTCG
____________________________________________________________
consensus AACAGTGAAGGGTCGGGTGCAAATCTTGCATTCCTTGTCATAATCAGCTTTAGTCATTCG
. : . : . : . : . : . :
JMFF032L06+ AACGTATGGACTGTCACCAAGACACGACTCACATATAATCGGAAAGTCAGATCGCTCCCA
JMSF025B20+ AACGTATGGACTGTCACCAAGACACGACTCACATATAATCGGAAAGTCAGATCGCTCCCA
JMSF008L09+ AACGTAAGGACTGTCGCCGAGACACGACTCGCAGATGATCGGAAAGTCCGACCGTTCCCA
JMSF041N04+ AACGTATGGACTGTCACCAAGACACGACTCACATATAATCGGAAAGTCAGATCGCTCCCA
____________________________________________________________
consensus AACGTATGGACTGTCACCAAGACACGACTCACATATAATCGGAAAGTCAGATCGCTCCCA
. : . : . : . : . : . :
JMFF032L06+ TCCATCAGCTTCAACATCTCTCAATAGCCTATGAGCCATGAACCCGTTGTAACTTTAATC
JMSF025B20+ TCCATCAGCTTCAACATCTCTCAATAGCCTATGAGCCATGAACCCGTTGTAACTTTAATC
JMSF008L09+ TCCATCAGCTTCGGCGTCTCTCAATAGCCTATGCGCCAT
JMSF041N04+ TCCATCAGCTTCAACATCTCTCAATAGCCTATGAGCCATGAACCCGTTGTAACTTTAATC
____________________________________________________________
consensus TCCATCAGCTTCAACATCTCTCAATAGCCTATGAGCCATGAACCCGTTGTAACTTTAATC
. : . : . : . : . : . :
JMFF032L06+ CCACACCTGGAGTTAATTTAAACACGAAGATGCGCTATTTCCCCGTGATTACGCACGAAC
JMSF025B20+ CCACACCTGGAGTTAATTTAAACACGAAGATGCGCTATTTCCCCGTGATTACGCACGAAC
JMSF041N04+ CCACACCTGGAGTTAATTTAAACACGAAGATGCGCTATTTCCCCGTGATTACGCACGAAC
____________________________________________________________
consensus CCACACCTGGAGTTAATTTAAACACGAAGATGCGCTATTTCCCCGTGATTACGCACGAAC
. : . : . : . : . : . :
JMFF032L06+ AGTGTGATTCGCTGCTTGCTAATGTTAATCGGAGATGCCGTAGATTGTACGGATCGACGG
JMSF025B20+ AGTGTGATTCGCTGCTTGCTAATGTTAATCGGAGATGCCGTAGATTGTACGGATCGACGG
JMSF041N04+ AGTGTGATTCGCTGCTTGCTAATGTTAATCGGAGATGCCGTAGATTGTACGGATCGACGG
____________________________________________________________
consensus AGTGTGATTCGCTGCTTGCTAATGTTAATCGGAGATGCCGTAGATTGTACGGATCGACGG
. : . : . : . : . : . :
JMFF032L06+ CGAACGCTTTTCGGCCGGCGGAGCGAGAGGGAAAAGAGGATGAGCAAATCGTTGAAATGC
JMSF025B20+ CGAACGCTTTTCGGCCGGCGGAGCGAGAGGGAAAAGAGGATGAGCAAATCGTTGAAATGC
JMSF041N04+ CGAACGCTTTTCGGCCGGCGGAGCGAGAGGGAAAAGAGGATGAGCAAATCGTTGAAATGC
____________________________________________________________
consensus CGAACGCTTTTCGGCCGGCGGAGCGAGAGGGAAAAGAGGATGAGCAAATCGTTGAAATGC
. : . : . : . : . : . :
JMFF032L06+ AGTGAGAGAACGAGCCTTCTTT
JMSF025B20+ AGTGAGAGAACGAGCCTTCTTTGCCAATGAGGATTTTTTTC
JMSF041N04+ AGTGAGAGAACGAGCCTTCTTTGCCAATGAGGATTTTTTTCGGATTAAAATAAATTTCTT
____________________________________________________________
consensus AGTGAGAGAACGAGCCTTCTTTGCCAATGAGGATTTTTTTCGGATTAAAATAAATTTCTT