Contig 006656:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040J18Sequence680006656 (2)ref|XP_006344443.1|1e-78PREDICTED: kinetochore protein spc25-like [Solanum tuberosum]888006656 (2)ref|XP_006344443.1|6e-89PREDICTED: kinetochore protein spc25-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF040J18-                                                            GAGGCTGAAG
                      ____________________________________________________________
consensus                                                               GAGGCTGAAG
 
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rJMSF040J18-          CCATGAAAAAAGCAAGTCCAAATGTGGAAGGTTTGTGAATTACAAACCCTAATAACAACA
                      ____________________________________________________________
consensus             CCATGAAAAAAGCAAGTCCAAATGTGGAAGGTTTGTGAATTACAAACCCTAATAACAACA
 
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rJMSF040J18-          CAAGCCTTTTGGCCCCTTGGCCTTGGGTGCCACTTCTAATGTAGGGGTAAAGTACATTTT
                      ____________________________________________________________
consensus             CAAGCCTTTTGGCCCCTTGGCCTTGGGTGCCACTTCTAATGTAGGGGTAAAGTACATTTT
 
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rJMSF040J18-          GTTACACCTAGATGCATTTGTCAAACTGATTGGGTTAGGAAACTTCCAAGGTGTAATTAC
                      ____________________________________________________________
consensus             GTTACACCTAGATGCATTTGTCAAACTGATTGGGTTAGGAAACTTCCAAGGTGTAATTAC
 
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rJMSF040J18-          AGACTGACTCAAGTCAAAAGAAAATTCTTCGGCTTATGTTCACTTCTTGACCTTAAAACG
                      ____________________________________________________________
consensus             AGACTGACTCAAGTCAAAAGAAAATTCTTCGGCTTATGTTCACTTCTTGACCTTAAAACG
 
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rJMSF040J18-          CGGAGAGCGACGAAGAGATGAAGCAGATCCAGGAGAGAGGAGCCCTGACCTGCCTCCTTT
                      ____________________________________________________________
consensus             CGGAGAGCGACGAAGAGATGAAGCAGATCCAGGAGAGAGGAGCCCTGACCTGCCTCCTTT
 
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rJMSF040J18-          GCCATGCCTAAGTTTCTTTGAGTTTCTGTTGAATTCTTCAGCTTGAGGACCTCTTTGCTT
                      ____________________________________________________________
consensus             GCCATGCCTAAGTTTCTTTGAGTTTCTGTTGAATTCTTCAGCTTGAGGACCTCTTTGCTT
 
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rJMSF040J18-          GGATGGAGATTCACTTCCACAATCAGTTGAGACTGAACAAACTGGAGCAGACACAGATAT
                      ____________________________________________________________
consensus             GGATGGAGATTCACTTCCACAATCAGTTGAGACTGAACAAACTGGAGCAGACACAGATAT
 
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rJMSF040J18-          CGTGGAAGTATCTTGGTCTTGAGATGTCACTTTAGGAAAATTTCCGTATAATGCAGCTTC
                      ____________________________________________________________
consensus             CGTGGAAGTATCTTGGTCTTGAGATGTCACTTTAGGAAAATTTCCGTATAATGCAGCTTC
 
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rJMSF040J18-          TTGAAATTTTTCCCTCATAGTCCTGACAAATTTGAATAGACCGTTGCTTTTATTTAACTC
                      ____________________________________________________________
consensus             TTGAAATTTTTCCCTCATAGTCCTGACAAATTTGAATAGACCGTTGCTTTTATTTAACTC
 
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rJMSF040J18-          AGTGAGCAGCTCTTTTATGTCATTTAGATGTGGATCACAATCAAGCAAAGTATAGTAATC
                      ____________________________________________________________
consensus             AGTGAGCAGCTCTTTTATGTCATTTAGATGTGGATCACAATCAAGCAAAGTATAGTAATC
 
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rJMSF040J18-          ATTCTCATGACGAACAGTAAAGGAGTACTCCTCATGGGGGTCCTTCATATTAATGTTTGT
JMSF040J18+                                                   TCCTTCATATTAATGTTNGT
                      ____________________________________________________________
consensus             ATTCTCATGACGAACAGTAAAGGAGTACTCCTCATGGGGGTCCTTCATATTAATGTTTGT
 
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rJMSF040J18-          AAAGATGAACTTTACTCCACTGCCGCACTCAACCCGGAAACCAAGGACCCTGTTGTACCA
JMSF040J18+           AAAGATGAACTTTACTCCACTGCCGCACTCAACCCGGAAACCAAGGACCCTGTTGTACCA
                      ____________________________________________________________
consensus             AAAGATGAACTTTACTCCACTGCCGCACTCAACCCGGAAACCAAGGACCCTGTTGTACCA
 
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rJMSF040J18-          CAAAATAGCCTCTTCTATTTCGTCTCTATGTTCAGAATTCTGGTTACGCTTCTCCTCACA
JMSF040J18+           CAAAATAGCCTCTTCTATTTCGTCTCTATGTTCAGAATTCTGGTTACGCTTCTCCTCACA
                      ____________________________________________________________
consensus             CAAAATAGCCTCTTCTATTTCGTCTCTATGTTCAGAATTCTGGTTACGCTTCTCCTCACA
 
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rJMSF040J18-          TGCTTTCAGAGCATTGGATTGCTCAGATATTATTGCGGCGTATTCATCTCTTCTCGCCCT
JMSF040J18+           TGCTTTCAGAGCATTGGATTGCTCAGATATTATTGCGGCGTATTCATCTCTTCTCGCCCT
                      ____________________________________________________________
consensus             TGCTTTCAGAGCATTGGATTGCTCAGATATTATTGCGGCGTATTCATCTCTTCTCGCCCT
 
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rJMSF040J18-          ATGATCTTCAACAACTCCTTTAAGTTCTTCTATTC                         
JMSF040J18+           ATGATCTTCAACAACTCCTTTAAGTTCTTCTATTCTTGCTTTTGTCACGGATAGTGAATC
                      ____________________________________________________________
consensus             ATGATCTTCAACAACTCCTTTAAGTTCTTCTATTCTTGCTTTTGTCACGGATAGTGAATC
 
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JMSF040J18+           TGCTATCGCTATCCGCTTTGCCTCCTTTCTGGTTTTTACTGCAAGTGCTTTCACCAATCC
                      ____________________________________________________________
consensus             TGCTATCGCTATCCGCTTTGCCTCCTTTCTGGTTTTTACTGCAAGTGCTTTCACCAATCC
 
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JMSF040J18+           ATCTTCCACCTCTCTAAGCTCAGCTTTCAATTTCACGAGTTTCCCTTGAAGTTGAACGGT
                      ____________________________________________________________
consensus             ATCTTCCACCTCTCTAAGCTCAGCTTTCAATTTCACGAGTTTCCCTTGAAGTTGAACGGT
 
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JMSF040J18+           CTCTTGAGCTTTGGATTTGTTCGAATCGAGAGATTTCTGAAAGGTTGCGGTGACAGAGTC
                      ____________________________________________________________
consensus             CTCTTGAGCTTTGGATTTGTTCGAATCGAGAGATTTCTGAAAGGTTGCGGTGACAGAGTC
 
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JMSF040J18+           GATGCGGCGCTGCATGATCGGTATTTCTCCGGCGCATTTGAGCCTCAATTCCTCCATCTG
                      ____________________________________________________________
consensus             GATGCGGCGCTGCATGATCGGTATTTCTCCGGCGCATTTGAGCCTCAATTCCTCCATCTG
 
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JMSF040J18+           CGCCCGCACAGTTGCCCCTACTGTGCTCTCCATCTCCAGTCCCAGATGGCTTCTTAAGCC
                      ____________________________________________________________
consensus             CGCCCGCACAGTTGCCCCTACTGTGCTCTCCATCTCCAGTCCCAGATGGCTTCTTAAGCC
 
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JMSF040J18+           CTTTGCGTCGTACGAACCGGAGACGGCAAGAGAGAGTAGCGTTCAATTTGAAAAAGCAAG
                      ____________________________________________________________
consensus             CTTTGCGTCGTACGAACCGGAGACGGCAAGAGAGAGTAGCGTTCAATTTGAAAAAGCAAG
 
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JMSF040J18+           AGAACAGTGGAGCTCTGCTTAGCCCGCCATTTTCATTTGTGTTTTGAAAACAGAATCCAC
                      ____________________________________________________________
consensus             AGAACAGTGGAGCTCTGCTTAGCCCGCCATTTTCATTTGTGTTTTGAAAACAGAATCCAC