Contig 006654:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015B01Sequence510006654 (2)ref|XP_009791699.1|6e-25PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Nicotiana sylvestris]630004349 (2)gb|AIU50073.1|3e-4415-cis-zeta-carotene isomerase, partial [Prunus persica]
JMSF040D15Sequence668006654 (2)ref|XP_009791699.1|1e-35PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Nicotiana sylvestris]405004349 (2)gb|AIU50073.1|5e-0815-cis-zeta-carotene isomerase, partial [Prunus persica]

Alignment

This contig is upended


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JMSF040D15+                                                               AAACTAGC
                      ____________________________________________________________
consensus                                                                 AAACTAGC
 
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JMSF015B01+                                                              CTCATGACT
JMSF040D15+           AAGACCACTGTGTACTATTGCAAAAATAAGAGTAAGGGCGAACATTACAATCTCATGACT
                      ____________________________________________________________
consensus             AAGACCACTGTGTACTATTGCAAAAATAAGAGTAAGGGCGAACATTACAATCTCATGACT
 
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JMSF015B01+           GTCAGAGAGGCCGGAAACGGTGTCTATGAAGCTTTTGCCAAAGCCGGTGGAGTTATCGAT
JMSF040D15+           GTCAGAGAGGCCGGAAACGGTGTCTATGAAGCTTTTGCCAAAGCCGGTGGAGTTATCGAT
                      ____________________________________________________________
consensus             GTCAGAGAGGCCGGAAACGGTGTCTATGAAGCTTTTGCCAAAGCCGGTGGAGTTATCGAT
 
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JMSF015B01+           CCATAGCAAGTTGAGAGCATAGAGAACAACGGCAAGAATCACAGTGAAGTAAAGCCAAGA
JMSF040D15+           CCATAGCAAGTTGAGAGCATAGAGAACAACGGCAAGAATCACAGTGAAGTAAAGCCAAGA
                      ____________________________________________________________
consensus             CCATAGCAAGTTGAGAGCATAGAGAACAACGGCAAGAATCACAGTGAAGTAAAGCCAAGA
 
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JMSF015B01+           TGAAATCTTCTGTTTTGACAAGTCGAATTCCGCGGAATCCTCTCCCACCACCGCTTCTGC
JMSF040D15+           TGAAATCTTCTGTTTTGACAAGTCGAACTCCGCGGAATCCTCTCCCACCACCGCTTCTGC
                      ____________________________________________________________
consensus             TGAAATCTTCTGTTTTGACAAGTCGAATTCCGCGGAATCCTCTCCCACCACCGCTTCTGC
 
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JMSF015B01+           CTCCTCCCGCGTTTTACCCACCACACCCACTAACAACAGCGGGAGTTTCCTCCGATTATT
JMSF040D15+           CTCCTCCCGCGTTTTACCCACCACACCCACTAACAACAGCGGGAGTTTCCTCCGATTATT
                      ____________________________________________________________
consensus             CTCCTCCCGCGTTTTACCCACCACACCCACTAACAACAGCGGGAGTTTCCTCCGATTATT
 
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JMSF015B01+           GGGAGGGATTTCTACCCGGAAAGGCTTGGCGAGTCCATTAGTCCTCCAAGAAGAAGAAAA
JMSF040D15+           GGGAGGGATTTCTACCCGGAAAGGCTTGGCGAGTCCATTAGTCCTCCAAGAAGAAGAAAA
                      ____________________________________________________________
consensus             GGGAGGGATTTCTACCCGGAAAGGCTTGGCGAGTCCATTAGTCCTCCAAGAAGAAGAAAA
 
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JMSF015B01+           AGGAGAAGGAGAAGGAGAAGGGGATGATAGTCGTCTTGTAGTTGTTGTTGGCTTGGGTAG
JMSF040D15+           AGGAGAAGGAGAAGGAGAAGGGGATGATAGTCGTCTTGTAGTTGTTGTTGGCTTGGGTAG
                      ____________________________________________________________
consensus             AGGAGAAGGAGAAGGAGAAGGGGATGATAGTCGTCTTGTAGTTGTTGTTGGCTTGGGTAG
 
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JMSF015B01+           ATGAAGGAATGGGTTTGAGAGGAAAATGGAGGAAGTTGCCATAGGTGGGTGATTCAAGAT
JMSF040D15+           ATGAAGGAATGGGTTTGAGAGGAAAATGGAGGAAGTTGCCATAGGTGGGTGATTCAAGAT
                      ____________________________________________________________
consensus             ATGAAGGAATGGGTTTGAGAGGAAAATGGAGGAAGTTGCCATAGGTGGGTGATTCAAGAT
 
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JMSF015B01+           TGAAGATGTTCAGGAGAAAAAAATTGGTAAGAAATACAGTAATACAGGCAAAACAGGAGA
JMSF040D15+           TGAAGATGTTCAGGAGAAAAAAATTGGTAAGAAATACAGTAATACAGGCAAAACAGGAGA
                      ____________________________________________________________
consensus             TGAAGATGTTCAGGAGAAAAAAATTGGTAAGAAATACAGTAATACAGGCAAAACAGGAGA
 
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JMSF015B01+           GGGAATCTAGAGAGGAAGGT                                        
JMSF040D15+           GGGAATCTAGAGAGGAAGGTGCTGTTTGGAGTGGGTTTTGGACGGCTTTGGCGGAGGGAA
                      ____________________________________________________________
consensus             GGGAATCTAGAGAGGAAGGTGCTGTTTGGAGTGGGTTTTGGACGGCTTTGGCGGAGGGAA
 
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JMSF040D15+           TTGAAGTGCTAATCCCACTCGCTCCCACCACTCTTCGTTACATGGAGTTGGCGGTGGATC
                      ____________________________________________________________
consensus             TTGAAGTGCTAATCCCACTCGCTCCCACCACTCTTCGTTACATGGAGTTGGCGGTGGATC