Contig 006652:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040C13-                                                               AACATAA
                      ____________________________________________________________
consensus                                                                  AACATAA
 
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rJMSF040C13-          ATATAAGAGAACTTTATTTTATGATTCTTGTTTTGTGGTTTGAACACTTAATAACACTAT
                      ____________________________________________________________
consensus             ATATAAGAGAACTTTATTTTATGATTCTTGTTTTGTGGTTTGAACACTTAATAACACTAT
 
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rJMFF015M16-                                                            GAACATGACA
rJMSF040C13-          TAAACAGAATACAATTGAACACCAATTTTATTTCGATAATAATAAAGTCTGAACATGACA
                      ____________________________________________________________
consensus             TAAACAGAATACAATTGAACACCAATTTTATTTCGATAATAATAAAGTCTGAACATGACA
 
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rJMFF015M16-          TTAAACATCTGCAGAGTAAAATCAACGCTGGATGAAAGAAGCAATGCGGGCAATGAGATG
rJMSF040C13-          TTAAACATCTGCAGAGTAAAATCAACGCTGGATGAAAGAAGCAATGCGGGCAATGAGATG
                      ____________________________________________________________
consensus             TTAAACATCTGCAGAGTAAAATCAACGCTGGATGAAAGAAGCAATGCGGGCAATGAGATG
 
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rJMFF015M16-          TTTGGCTTTCTCTGAATAAGGATCGAAGATGTCAAACACATGATCCTCTCCTTCAACATC
rJMSF040C13-          TTTGGCTTTCTCTGAATAAGGATCGAAGATGTCAAACACATGATCCTCTCCTTCAACATC
                      ____________________________________________________________
consensus             TTTGGCTTTCTCTGAATAAGGATCGAAGATGTCAAACACATGATCCTCTCCTTCAACATC
 
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rJMFF015M16-          AATCACCTCAATTTCTCCTTCCCACCCACTTTTCTTCACTGCCTCAACATATCGAATTCC
rJMSF040C13-          AATCACCTCAATTTCTCCTTCCCACCCACTTTTCTTCACTGCCTCAACATATCGAATTCC
                      ____________________________________________________________
consensus             AATCACCTCAATTTCTCCTTCCCACCCACTTTTCTTCACTGCCTCAACATATCGAATTCC
 
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rJMFF015M16-          CACTCCTTTCAGCGCATCTTTCTCTCCCACACAGACAAACATCCTCGAACAACCCAACCC
rJMSF040C13-          CACTCCTTTCAGCGCATCTTTCTCTCCCACACAGACAAACATCCTCGAACAACCCAACCC
                      ____________________________________________________________
consensus             CACTCCTTTCAGCGCATCTTTCTCTCCCACACAGACAAACATCCTCGAACAACCCAACCC
 
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rJMFF015M16-          AGACAGCTTCGGACCATTCTCCACAAATGGATTAATCAGGGGATTGTCGATTCCATCTGG
rJMSF040C13-          AGACAGCTTCGGACCATTCTCCACAAATGGATTAATCAGGGGATTGTCGATTCCATCTGG
                      ____________________________________________________________
consensus             AGACAGCTTCGGACCATTCTCCACAAATGGATTAATCAGGGGATTGTCGATTCCATCTGG
 
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rJMFF015M16-          AGCTGTCGGGTAAACGAAACCCCAGACCCTTCTGGCTAAAGATTCAGTGTTGGCTTCGAA
rJMSF040C13-          AGCTGTCGGGTAAACGAAACCCCAGACCCTTCTGGCTAAAGATTCAGTGTTGGCTTCGAA
JMSF040C13+                                              CTAAAGATTCAGTGTTGGCTTCGAA
                      ____________________________________________________________
consensus             AGCTGTCGGGTAAACGAAACCCCAGACCCTTCTGGCTAAAGATTCAGTGTTGGCTTCGAA
 
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rJMFF015M16-          TGAGCCCCAGAAGTATGGGTAAGATAGAATCGCACCCGAGATCTTCACTTCTCCGATTTT
rJMSF040C13-          TGAGCCCCAGAAGTATGGGTAAGATAGAATCGCACCCGAGATCTTCACTTCTCCGATTTT
JMSF040C13+           TGAGCCCCAGAAGTATGGGTAAGATAGAATCGCACCCGAGATCTTCACTTCTCCGATTTT
                      ____________________________________________________________
consensus             TGAGCCCCAGAAGTATGGGTAAGATAGAATCGCACCCGAGATCTTCACTTCTCCGATTTT
 
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rJMFF015M16-          TCCAGCTCTAATCAGGGTGTTGTGGACTATATTACCGCCGGCGCTATCGCCGCCGATGAG
rJMSF040C13-          TCCAGCTCTAATCAGGGTGTTGTGGACTATATTACCGCCGGCGCTATCGCCGCCGATGAG
JMFF015M16+                                                     GCTATCGCCGCCGATGAG
JMSF040C13+           TCCAGCTCTAATCAGGGTGTTGTGGACTATATTACCGCCGGCGCTATCGCCGCCGATGAG
                      ____________________________________________________________
consensus             TCCAGCTCTAATCAGGGTGTTGTGGACTATATTACCGCCGGCGCTATCGCCGCCGATGAG
 
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rJMFF015M16-          AATCTTATCGAAGTTACCATGGTTAACTAACCATGGGTTCTTTTACGCCGATTTTCTCCG
rJMSF040C13-          AATCTTATCGAAGTTACCATGGTTAACTAACCAT-GGTTCTTTTACGCCGATTTTCTCCG
JMFF015M16+           AATCTTATCGAAGTTACCATGGTTAACTAACCAT-GGTTCTTTTACGCCGATTTTCTCCG
JMSF040C13+           AATCTTATCGAAGTTACCATGGTTAACTAACCAT-GGTTCTTTTACGCCGATTTTCTCCG
                      ____________________________________________________________
consensus             AATCTTATCGAAGTTACCATGGTTAACTAACCAT-GGTTCTTTTACGCCGATTTTCTCCG
 
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rJMFF015M16-          GGTGCGCGTGAGAAGCGACCCACTGTANAGCTTCCCAACAATCCTCATACGCGGCCGGCA
rJMSF040C13-          GGTGCGCGTGAGAAGCGACCCACTGTAGAGCTTCCCAACAATCCTCATACGCGGCCGGCA
JMFF015M16+           GGTGCGCGTGAGAAGCGACCCACTGTAGAGCTTCCCAACAATCCTCATACGCGGCCGGCA
JMSF040C13+           GGTGCGCGTGAGAAGCGACCCACTGTAGAGCTTCCCAACAATCCTCATACGCGGCCGGCA
                      ____________________________________________________________
consensus             GGTGCGCGTGAGAAGCGACCCACTGTAGAGCTTCCCAACAATCCTCATACGCGGCCGGCA
 
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rJMFF015M16-          AGGGGTTCTCCGGCGCG                                           
rJMSF040C13-          AGGGGTTCTCCGGCGCGAGCCGGTACTCGACGGAGACG                      
JMFF015M16+           AGGGGTTCTCCGGCGCGAGCCGGTACTCGACGGAGACGGCGACGGCTTGGGCCTCCGAGG
JMSF040C13+           AGGGGTTCTCCGGCGCGAGCCGGTACTCGACGGAGACGGCGACGGCTTGGGCCTCCGAGG
                      ____________________________________________________________
consensus             AGGGGTTCTCCGGCGCGAGCCGGTACTCGACGGAGACGGCGACGGCTTGGGCCTCCGAGG
 
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JMFF015M16+           CTAGAATGTTGAGGTAGCGGTGGTAGAGGGAGGAAAAGGCGGATTCGATGCAAAATCCAC
JMSF040C13+           CTAGAATGTTGAGGTAGCGGTGGTAGAGGGAGGAAAAGGCGGATTCGATGCAAAATCCAC
                      ____________________________________________________________
consensus             CTAGAATGTTGAGGTAGCGGTGGTAGAGGGAGGAAAAGGCGGATTCGATGCAAAATCCAC
 
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JMFF015M16+           CGCCGTGGAACCAGACTAAGATGGGGAGTTTTTGGTCAGCGGCGGCGAGCTTTGGGAGGT
JMSF040C13+           CGCCGTGGAACCAGACTAAGATGGGGAGTTTTTGGTCAGCGGCGGCGAGCTTTGGGAGGT
                      ____________________________________________________________
consensus             CGCCGTGGAACCAGACTAAGATGGGGAGTTTTTGGTCAGCGGCGGCGAGCTTTGGGAGGT
 
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JMFF015M16+           AGATTCTGGCGGAGATATGAGGAGAGATGGTGACGTCTTTGGAGGAGACAGCGGCGGATG
JMSF040C13+           AGATTCTGGCGGAGATATGAGGAGAGATGGTGACGTCTTTGGAGGAGACAGCGGCGGATG
                      ____________________________________________________________
consensus             AGATTCTGGCGGAGATATGAGGAGAGATGGTGACGTCTTTGGAGGAGACAGCGGCGGATG
 
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JMFF015M16+           GGTCTTCCGGCGATGGAGGAACATAAGGAAAGTTAGCGATCCGGTCGACGCGGCCGTCGG
JMSF040C13+           GGTCTTCCGGCGATGGAGGAACATAAGGAAAGTTAGCGATCCGGTCGACGCGGCCGTCGG
                      ____________________________________________________________
consensus             GGTCTTCCGGCGATGGAGGAACATAAGGAAAGTTAGCGATCCGGTCGACGCGGCCGTCGG
 
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JMFF015M16+           TGTAGACTATAAGCATTGGAGAGAAATCCAATAGCACGCCATCCTTGTTCGGAGCCGCCA
JMSF040C13+           TGTAGACTATAAGCATTGGAGAGAAATCCAATAGCACGCCATCCTTGTTCGGAGCCGCCA
                      ____________________________________________________________
consensus             TGTAGACTATAAGCATTGGAGAGAAATCCAATAGCACGCCATCCTTGTTCGGAGCCGCCA
 
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JMFF015M16+           TAGTCTCAGAGTCTCAGTATAATTTGGGGGCGCAATTATGTGAAGGAGAAAAGGAT    
JMSF040C13+           TAGTCTCAGAGTCTCAGTATAATTTGGGGGCGCAATTATGTGAAGGAGAAAAGGATACTG
                      ____________________________________________________________
consensus             TAGTCTCAGAGTCTCAGTATAATTTGGGGGCGCAATTATGTGAAGGAGAAAAGGATACTG