| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008D10 | Sequence | 657 | 006651 (4) | ref|XP_004238462.1| | 2e-102 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 793 | 008155 (5) | ref|XP_009590777.1| | 6e-119 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
| JMFF032D10 | Sequence | 551 | 006651 (4) | ref|XP_004238462.1| | 1e-76 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 747 | 008155 (5) | ref|XP_009590777.1| | 7e-120 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
| JMSF040C02 | Sequence | 675 | 006651 (4) | ref|XP_004238462.1| | 8e-106 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 929 | 008155 (5) | ref|XP_009590777.1| | 2e-142 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
| JMSF049M19 | Sequence | 670 | 006651 (4) | ref|XP_004238462.1| | 9e-80 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Solanum lycopersicum] | 743 | 008155 (5) | ref|XP_009590777.1| | 5e-128 | PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
JMSF049M19+ CAGGGGTACCAATTATG
JMSF040C02+ GGGGTACCAATTATA
____________________________________________________________
consensus CAGGGGTACCAATTATG
. : . : . : . : . : . :
JMSF049M19+ ACTTGAGCTGTAACAGGAGGTCGCTTATTTATTGGAACATAGTTGGCAGCATCTGCTGGT
JMFF008D10+ TTGAGCTGTAACAGGAGGTCGTTTATTTATTGGAATATAGTTGGCAGCATCTGCTGGA
JMSF040C02+ ACTTGAGCTGTAACAGGAGGTCGTTTATTTATTGGAATATAGTTGGCAGCATCTGCTGGA
____________________________________________________________
consensus ACTTGAGCTGTAACAGGAGGTCGTTTATTTATTGGAATATAGTTGGCAGCATCTGCTGGA
. : . : . : . : . : . :
JMSF049M19+ ATTGCCAATTCTGATGTTATACCAGTATACTTCCCCATCTTCAACAGAACTTCCATATTC
JMFF008D10+ ATTGCCAATTCTGATGTTATACCAGTATACTTCCCCATCTTCAACAGAACTTCCATATTC
JMFF032D10+ ACTTCCATATTC
JMSF040C02+ ATTGCCAATTCTGATGTTATACCAGTATACTTCCCCATCTTCAACAGAACTTCCATATTC
____________________________________________________________
consensus ATTGCCAATTCTGATGTTATACCAGTATACTTCCCCATCTTCAACAGAACTTCCATATTC
. : . : . : . : . : . :
JMSF049M19+ TGAATGGCAAGTTCTCTAGTGGGACAAATGCAGAGAGCCTGAGGGGCAGCGAGCTTCGGA
JMFF008D10+ TGAATGGCAAGTTCTCTAGTGGGACAAATACAGAGAGCCTGAGGGGCAGCGAGCTTCGGA
JMFF032D10+ TGAATGGCAAGTTCTCTAGTGGGACAAATACAGAGAGCCTGAGGGGCAGCGAGCTTCGGA
JMSF040C02+ TGAATGGCAAGTTCTCTAGTGGGACAAATACAGAGAGCCTGAGGGGCAGCGAGCTTCGGA
____________________________________________________________
consensus TGAATGGCAAGTTCTCTAGTGGGACAAATACAGAGAGCCTGAGGGGCAGCGAGCTTCGGA
. : . : . : . : . : . :
JMSF049M19+ TCAACTCGGCTCAACATTCCAAGCACAAAGCACGTCGTCTTACCGGATCCAT--TGTGCC
JMFF008D10+ TCAACTCGGCTCAACATTCCAAGCACAAAGCACGTTGTCTTACCGGATCCATTATGAGCC
JMFF032D10+ TCAACTCGGCTCAACATTCCAAGCACAAAGCACGTTGTCTTACCGGATCCATTATGAGCC
JMSF040C02+ TCAACTCGGCTCAACATTCCAAGCACAAAGCACGTTGTCTTACCGGATCCATTATGAGCC
____________________________________________________________
consensus TCAACTCGGCTCAACATTCCAAGCACAAAGCACGTTGTCTTACCGGATCCATTATGAGCC
. : . : . : . : . : . :
JMSF049M19+ TGTGCAATCAGATTCTTGTTCGGCGGGGTCAGTATCATAGGCAAACTGATTTCCTGAATT
JMFF008D10+ TGGGCAATAAGATTCTTGTTCGGCGGAGTGAGTATCATAGGCAGACTGATTTCCTGAATT
JMFF032D10+ TGGGCAATAAGATTCTTGTTCGGCGGAGTGAGTATCATAGGCAGACTGATTTCCTGAATT
JMSF040C02+ TGGGCAATAAGATTCTTGTTCGGCGGAGTGAGTATCATAGGCAGACTGATTTCCTGAATT
____________________________________________________________
consensus TGGGCAATAAGATTCTTGTTCGGCGGAGTGAGTATCATAGGCAGACTGATTTCCTGAATT
. : . : . : . : . : . :
JMSF049M19+ TTACTAGGCCTCTCAAACTTCATCTCTACATATAATCCCTTCAGCAACTCCGGCGTCAGG
JMFF008D10+ TTACTCGGCCTCTCAAACTTCATCTCTACATATAATCCCTTCAGCAACTCCGGAGTCAAG
JMFF032D10+ TTACTCGGCCTCTCAAACTTCATCTCTACATATAATCCCTTCAGCAACTCCGGAGTCAAG
JMSF040C02+ TTACTCGGCCTCTCAAACTTCATCTCTACATATAATCCCTTCAGCAACTCCGGAGTCAAG
____________________________________________________________
consensus TTACTCGGCCTCTCAAACTTCATCTCTACATATAATCCCTTCAGCAACTCCGGAGTCAAG
. : . : . : . : . : . :
JMSF049M19+ TTCAAGTCTTCGAACCTTTTGGCAGATTTATACAAAGTATCCCCCGATGTAACAGCTTCG
JMFF008D10+ TTCAAGTCTTCGAACCTTTTGGCAGATTTATACAAAGTATCCCCAGATGTAACAGCTTCG
JMFF032D10+ TTCAAGTCTTCGAACCTTTTGGCAGATTTATACAAAGTATCCCCAGATGTAACAGCTTCG
JMSF040C02+ TTCAAGTCTTCGAACCTTTTGGCAGATTTATACAAAGTATCCCCAGATGTAACAGCTTCG
____________________________________________________________
consensus TTCAAGTCTTCGAACCTTTTGGCAGATTTATACAAAGTATCCCCAGATGTAACAGCTTCG
. : . : . : . : . : . :
JMSF049M19+ ATACTGGCGTCGTCAGGGTCAGAGAGGGTTTTGTGGACGCTTTGGGACTCATCCATGGCT
JMFF008D10+ ATACTGGCGTCGTCAGGGTCAGAGAGGGTTTTGTAGACACTTTTGGACTCATCCATGGCT
JMFF032D10+ ATACTGGCGTCGTCAGGGTCAGAGAGGGTTTTGTAGACACTTTTGGACTCATCCATGGCT
JMSF040C02+ ATACTGGCGTCGTCAGGGTCAGAGAGGGTTTTGTAGACACTTTTGGACTCATCCATGGCT
____________________________________________________________
consensus ATACTGGCGTCGTCAGGGTCAGAGAGGGTTTTGTAGACACTTTTGGACTCATCCATGGCT
. : . : . : . : . : . :
JMSF049M19+ AGATACTCCATTTTAAGTTCGGGGTTGGGTTTCACATCGGAGGTTGATGATGCCTCCGCT
JMFF008D10+ AGAGAGTCCATATTAAGTTCGGAACTGGGTTTCACATCGGAGGTCGATGATGCCTCCGCT
JMFF032D10+ AGAGAGTCCATATTAAGTTCGGAACTGGGTTTCACATCGGAGGTCGATGATGCCTCCGCT
JMSF040C02+ AGAGAGTCCATATTAAGTTCGGAACTGGGTTTCACATCGGAGGTCGATGATGCCTCCGCT
____________________________________________________________
consensus AGAGAGTCCATATTAAGTTCGGAACTGGGTTTCACATCGGAGGTCGATGATGCCTCCGCT
. : . : . : . : . : . :
JMSF040C02+ TCCTCCGTCTCGTCTGCTACGTCGGCCCAACTCTTACTCAGCTGAGGTTTCGTCTCCTCC
____________________________________________________________
consensus TCCTCCGTCTCGTCTGCTACGTCGGCCCAACTCTTACTCAGCTGAGGTTTCGTCTCCTCC
. : . : . : . : . : . :
JMSF040C02+ ATCGCCGCCGAGGCGGCGACGGAAGTACTGTTGTCGGCCATTGGAACTCGAGATCTTCCC
____________________________________________________________
consensus ATCGCCGCCGAGGCGGCGACGGAAGTACTGTTGTCGGCCATTGGAACTCGAGATCTTCCC