Contig 006648:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS026C10Sequence627006648 (5)ref|XP_006350560.1|1e-53PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic-like [So
JMSF002P20Sequence239006648 (5)735001473 (4)ref|XP_009617458.1|2e-92PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform
JMSF015B03Sequence250006648 (5)782001473 (4)ref|XP_009617457.1|1e-106PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform
JMSF039M22Sequence642006648 (5)ref|XP_006350560.1|5e-46PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic-like [So807001473 (4)ref|XP_009617458.1|3e-99PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform
JMSF045H14Sequence764006648 (5)ref|XP_006350560.1|3e-76PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic-like [So707001473 (4)ref|XP_009617458.1|3e-85PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic isoform

Alignment

This contig is upended


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JMSF045H14+                                             AACAGATTCCTCATCCAAGGCAAGAG
                      ____________________________________________________________
consensus                                               AACAGATTCCTCATCCAAGGCAAGAG
 
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JMSF045H14+           TAGCTTCTAACGTGGAGAGCCAATCAGATTGTTGAAGCCAATGTCTCAAAGAGAGACTCC
                      ____________________________________________________________
consensus             TAGCTTCTAACGTGGAGAGCCAATCAGATTGTTGAAGCCAATGTCTCAAAGAGAGACTCC
 
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JMFS026C10+                                      AACTGCTATCATCAGTTGTTGACGAGCACACAT
JMSF045H14+           CATGATACCCATGGACTAGGGTAAATGAACTGCTATCATCAGTTGTTGACGAGCACACAT
                      ____________________________________________________________
consensus             CATGATACCCATGGACTAGGGTAAATGAACTGCTATCATCAGTTGTTGACGAGCACACAT
 
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JMFS026C10+           AGCCATGAACTGNCATTGAGTAAGAATGATACATGAGTTTCCTATGAGCTAGTCTCTTTA
JMSF045H14+           AGCCATGAACTTGCATTGAGTAAGAATGATACATGAGTTTCCTATGAGCTAGTCTCTTTA
JMSF039M22+                             AGTAAGAATGATACATGAGTTTCCTATGAGCTAGTCTCTTTA
                      ____________________________________________________________
consensus             AGCCATGAACTTGCATTGAGTAAGAATGATACATGAGTTTCCTATGAGCTAGTCTCTTTA
 
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JMFS026C10+           ACACCTCAACTGCCCTTCTCCCTNTACGCTTTGCTTGAGCACTGAAGTGTTGCCGAAGCA
JMSF045H14+           ACACCTCAACTGCCCTTCTCCCTCTACGCTTTGCTTGAGCACTGAAGTGTTGCCGAAGCA
JMSF039M22+           ACACCTCAACTGCCCTTCTCCCTCTACGCTTTGCTTGAGCACTGAAGTGTTGCCGAAGCA
                      ____________________________________________________________
consensus             ACACCTCAACTGCCCTTCTCCCTCTACGCTTTGCTTGAGCACTGAAGTGTTGCCGAAGCA
 
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JMFS026C10+           CAACTCTAGTCTTATACAATGGACTATTTGGATCCTTCACCACTGCTTCAAAAACTAGTT
JMSF045H14+           CAACTCTAGTCTTATACAATGGACTATTTGGATCCTTCACCACTGCTTCAAAAACTAGTT
JMSF039M22+           CAACTCTAGTCTTATACAATGGACTATTTGGATCCTTCACCACTGCTTCAAAAACTAGTT
                      ____________________________________________________________
consensus             CAACTCTAGTCTTATACAATGGACTATTTGGATCCTTCACCACTGCTTCAAAAACTAGTT
 
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JMFS026C10+           CACCGGCCCTGCCACCAAAGCCAATGCTAACACGGTTACGAATCTTAAAATCCGACATTC
JMSF045H14+           CACCGGCCCTGCCACCAAAGCCAATGCTAACACGGTTACGAATCTTAAAATCCGACATTC
JMSF039M22+           CACCGGCCCTGCCACCAAAGCCAATGCTAACACGGTTACGAATCTTAAAATCCGACATTC
                      ____________________________________________________________
consensus             CACCGGCCCTGCCACCAAAGCCAATGCTAACACGGTTACGAATCTTAAAATCCGACATTC
 
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JMFS026C10+           TAAACTTAGTTACATGGCTTAAATCATCCTCCAAGGAAGCAGAGCCAGTAAGATTGTCCT
JMSF045H14+           TAAACTTAGTTACATGGCTTAAATCATCCTCCAAGGAAGCAGAGCCAGTAAGATTGTCCT
JMSF039M22+           TAAACTTAGTTACATGGCTTAAATCATCCTCCAAGGAAGCAGAGCCAGTAAGATTGTCCT
                      ____________________________________________________________
consensus             TAAACTTAGTTACATGGCTTAAATCATCCTCCAAGGAAGCAGAGCCAGTAAGATTGTCCT
 
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JMSF015B03+                              AGGCAAAGCCTCGCTGGACAGCGAACAAGTAGTATTAATCC
JMFS026C10+           TCCCGCCAGAATCCACCATAGGCAAAGCCTCGCTGGACAGCGAACAAGTAGTATTAATCC
JMSF045H14+           TCCCGCCAGAATCCACCATAGGCAAAGCCTCGCTGGACAGCGAACAAGTAGTATTAATCC
JMSF039M22+           TCCCGCCAGAATCCACCATAGGCAAAGCCTCGCTGGACAGCGAACAAGTAGTATTAATCC
                      ____________________________________________________________
consensus             TCCCGCCAGAATCCACCATAGGCAAAGCCTCGCTGGACAGCGAACAAGTAGTATTAATCC
 
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JMSF015B03+           CGAGCTTCTTCAAACGAATCGGAATTTTTTTTCTCCGATCCAAAGGCAAAGGATTCNGTC
JMFS026C10+           CGAGCTTCTTCAAACGAATCGGAATTTTTTTTCTCCGATCCAAAGGCAAAGGATTCCGTC
JMSF045H14+           CGAGCTTCTTCAAACGAATCGGAATTTTTTTTCTCCGATCCAAAGGCAAAGGATTCCGTC
JMSF002P20+                                    TTTTTTTCTCCGATCCAAAGGCAAAGGATTCCGTC
JMSF039M22+           CGAGCTTCTTCAAACGAATCGGAATTTTTTTTCTCCGATCCAAAGGCAAAGGATTCCGTC
                      ____________________________________________________________
consensus             CGAGCTTCTTCAAACGAATCGGAATTTTTTTTCTCCGATCCAAAGGCAAAGGATTCCGTC
 
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JMSF015B03+           TAAACGGCGAATTCGTTNGACTAAAGCATCGGAGCTCAACAGACTCCATTCTCGGACTCG
JMFS026C10+           TAAACGGCGAATTCGTTAGACTAAAGCATCGGAGCTCAACAGACTCCATTCTCGGACTCG
JMSF045H14+           TAAACGGCGAATTCGTTAGACTAAAGCATCGGAGCTCAACAGACTCCATTCTCGGACTCG
JMSF002P20+           TAAACGGCGAATTCGTTAGACTAAAGCATCGGAGCTCAACAGACTCCATTCTCGGACTCG
JMSF039M22+           TAAACGGCGAATTCGTTAGACTAAAGCATCGGAGCTCAACAGACTCCATTCTCGGACTCG
                      ____________________________________________________________
consensus             TAAACGGCGAATTCGTTAGACTAAAGCATCGGAGCTCAACAGACTCCATTCTCGGACTCG
 
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JMSF015B03+           AAAGTACACCAATTAACGCCATACATATCCAATTCTACGCAGTATGGTGGAAAGAGACGG
JMFS026C10+           AAAGTACACCAATTAACGCCATACATATCCAATTCTACGCAGTATGGTGGAAAGAGACGG
JMSF045H14+           AAAGTACACCAATTAACGCCATACATATCCAATTCTACGCAGTATGGTGGAAAGAGACGG
JMSF002P20+           AAAGTACACCAATTAACGCCATACATATCCAATTCTACGCAGTATGGTGGAAAGAGACGG
JMSF039M22+           AAAGTACACCAATTAACGCCATACATATCCAATTCTACGCAGTATGGTGGAAAGAGACGG
                      ____________________________________________________________
consensus             AAAGTACACCAATTAACGCCATACATATCCAATTCTACGCAGTATGGTGGAAAGAGACGG
 
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JMSF015B03+           AGAAGATGAAGAGAAATGGATGAAGCAT                                
JMFS026C10+           AGAAGATGAAGAGAAATGGATGAAGCATAAATAGGACTTACGAGACGCCGTTTT      
JMSF045H14+           AGAAGATGAAGAGAAATGGATGAAGCATAAATAGGACTTACGAGACGCCGTTTTGTCAGT
JMSF002P20+           AGAAGATGAAGAGAAATGGATGAAGCATAAATAGGACTTACGAGACGCCGTTTTGTCAGT
JMSF039M22+           AGAAGATGAAGAGAAATGGATGAAGCATAAATAGGACTTACGAGACGCCGTTTTGTCAGT
                      ____________________________________________________________
consensus             AGAAGATGAAGAGAAATGGATGAAGCATAAATAGGACTTACGAGACGCCGTTTTGTCAGT
 
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JMSF045H14+           AGTAGTGTAGAGAAGCT                                           
JMSF002P20+           AGTAGTGTAGAGAAGCT                                           
JMSF039M22+           AGTAGTGTAGAGAAGCTAAGTGTGAGAATTGCGTGCACGTATAAGCAGTAAAGGTTCTCC
                      ____________________________________________________________
consensus             AGTAGTGTAGAGAAGCTAAGTGTGAGAATTGCGTGCACGTATAAGCAGTAAAGGTTCTCC