Contig 006643:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS035A05Sequence617006643 (10)ref|XP_009605022.1|301PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]
JMSF005N17Sequence338006643 (10)ref|XP_009605022.1|135PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]
JMSF006K19Sequence385006643 (10)ref|XP_009605022.1|160PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]286000769 (15)gb|AFW66500.1|9e-19hypothetical protein ZEAMMB73_479006 [Zea mays]
JMSF011H06Sequence404006643 (10)ref|XP_009605022.1|188PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]696012552 (9)ref|XP_006365506.1|7e-65PREDICTED: phospholipase A-2-activating protein-like [Solanum tuberosum]
JMSF012H06Sequence554006643 (10)ref|XP_009605022.1|279PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]699012552 (9)ref|XP_006365506.1|7e-65PREDICTED: phospholipase A-2-activating protein-like [Solanum tuberosum]
JMSF012H16Sequence494006643 (10)ref|XP_009605022.1|218PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]751012552 (9)ref|XP_006365506.1|1e-64PREDICTED: phospholipase A-2-activating protein-like [Solanum tuberosum]
JMSF026M15Sequence635006643 (10)ref|XP_009605022.1|305PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]720012552 (9)ref|XP_006365506.1|8e-60PREDICTED: phospholipase A-2-activating protein-like [Solanum tuberosum]
JMSF037K02Sequence617006643 (10)ref|XP_009605022.1|290PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]701012552 (9)ref|XP_006365506.1|6e-63PREDICTED: phospholipase A-2-activating protein-like [Solanum tuberosum]
JMSF039I02Sequence641006643 (10)ref|XP_009605022.1|288PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]788012552 (9)ref|XP_006365506.1|1e-78PREDICTED: phospholipase A-2-activating protein-like [Solanum tuberosum]
JMSF042O14Sequence774006643 (10)ref|XP_009605022.1|369PREDICTED: phospholipase A-2-activating protein [Nicotiana tomentosiformis]648012552 (9)ref|XP_006365506.1|8e-53PREDICTED: phospholipase A-2-activating protein-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF042O14+                                                                CCATCAT
                      ____________________________________________________________
consensus                                                                  CCATCAT
 
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JMSF042O14+           GTGATGCAGAGAGGACTCCTAAATCAGGCATCACAGCCAAGCCTCGAACTGTATCTGTAT
                      ____________________________________________________________
consensus             GTGATGCAGAGAGGACTCCTAAATCAGGCATCACAGCCAAGCCTCGAACTGTATCTGTAT
 
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JMSF026M15+                                                        AGGTCATGTCACTTG
JMFS035A05+                                                        AGGTCATGTAACTTG
JMSF042O14+           GGCCAACAAAAGTGTGTGCACATGTGGCTCCCTTCCAAAGCTTTAAGGTCATGTCACTTG
                      ____________________________________________________________
consensus             GGCCAACAAAAGTGTGTGCACATGTGGCTCCCTTCCAAAGCTTTAAGGTCATGTCACTTG
 
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JMSF026M15+           AACCAGTTACAAGCTCTCCTGAAGGCAACTTAACAATTGCTTGAATAGGTGCTTTATGAG
JMSF012H06+                                      ACTTAACAATTGCTNGAATAGGTGCTTTATGAG
JMSF037K02+                           TCCTGAAGGCAACTTAACAATTGCTTGAATAGGTGCTTTATGAG
JMFS035A05+           AAACAGTACAAAGCTCTCCTGAAGGCAACTTAACAATTGCTTGAATAGGTGCTTTATGAG
JMSF042O14+           AACCAGTTACAAGCTCTCCTGAAGGCAACTTAACAATTGCTTGAATAGGTGCTTTATGAG
JMSF039I02+                              TGAAGGCAACTTAACAATTGCTTGAATAGGTGCTTTATGAG
                      ____________________________________________________________
consensus             AACCAGTTACAAGCTCTCCTGAAGGCAACTTAACAATTGCTTGAATAGGTGCTTTATGAG
 
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JMSF026M15+           CTTCCAGAACTTCAATCTGTTTACCTTTCCTCCATCGTCTTAATGTACAATCAACAGAAG
JMSF012H06+           CTTCCAGAACTTCAATCTGTTTACCTTTCCTCCATCGTCTTAATGTACAATCAACAGAAG
JMSF037K02+           CTTCCAGAACTTCAATCTGTTTACCTTTCCTCCATCGTCTTAATGTACAATCAACAGAAG
JMFS035A05+           CTTCCAGAACTTCAATCTGTTTACCTTTCCTCCATCGTCTTAATGTACAATCAACAGAAG
JMSF042O14+           CTTCCAGAACTTCAATCTGTTTACCTTTCCTCCATCGTCTTAATGTACAATCAACAGAAG
JMSF039I02+           CTTCCAGAACTTCAATCTGTTTACCTTTCCTCCATCGTCTTAATGTACAATCAACAGAAG
                      ____________________________________________________________
consensus             CTTCCAGAACTTCAATCTGTTTACCTTTCCTCCATCGTCTTAATGTACAATCAACAGAAG
 
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JMSF026M15+           TTGACACAACATCTGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
JMSF012H06+           TTGACACAACATCTGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
JMSF012H16+                        TGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
JMSF037K02+           TTGACACAACATCTGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
JMFS035A05+           TTGACACAACATCTGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
JMSF042O14+           TTGACACAACATCTGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
JMSF039I02+           TTGACACAACATCTGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
                      ____________________________________________________________
consensus             TTGACACAACATCTGAGCCATCCAATGCAATGCCAGTAACTTGCAACTTATGACCCTTTA
 
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JMSF026M15+           GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
JMSF012H06+           GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
JMSF012H16+           GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
JMSF011H06+                           CCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
JMSF037K02+           GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
JMFS035A05+           GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
JMSF042O14+           GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
JMSF039I02+           GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
                      ____________________________________________________________
consensus             GTTCCTGAATTTTATCCCCAGTTGCCAAATTCCAAACAAAAATGTGAGTGTCCATGCCTC
 
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JMSF026M15+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMSF012H06+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMSF012H16+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMSF011H06+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMSF006K19+             GAAACAACTGCGCCNTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMSF005N17+                                                         AGCTAACGGCCCCA
JMSF037K02+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMFS035A05+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMSF042O14+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
JMSF039I02+           CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
                      ____________________________________________________________
consensus             CCGAAACAACTGCGCCCTCTGGAAACTCCTCACAAGGAGAGACCCAAGCTAACGGCCCCA
 
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JMSF026M15+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF012H06+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF012H16+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF011H06+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF006K19+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF005N17+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF037K02+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMFS035A05+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF042O14+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
JMSF039I02+           CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
                      ____________________________________________________________
consensus             CAAAGCTAGTATGGCCCAATAATATCTTTGACAGAGTGTAGTCACGATTGTTTGATCCAT
 
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JMSF026M15+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAGCACTATCAC
JMSF012H06+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMSF012H16+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMSF011H06+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMSF006K19+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMSF005N17+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMSF037K02+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMFS035A05+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMSF042O14+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
JMSF039I02+           CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
                      ____________________________________________________________
consensus             CAGGTGACCAGAGCCTAACAGTTCGATCTCTTGATGAAGTCGCAATACCAACACTATCAC
 
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JMSF026M15+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF012H06+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF012H16+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF011H06+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF006K19+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF005N17+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF037K02+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMFS035A05+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF042O14+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
JMSF039I02+           ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
                      ____________________________________________________________
consensus             ATATGCATACACCACGAACATCGTCTTCGTGCCCTCGAAGCTGGCATCTCAACCGATACT
 
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JMSF026M15+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF012H06+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF012H16+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF011H06+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF006K19+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF005N17+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF037K02+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMFS035A05+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF042O14+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
JMSF039I02+           CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
                      ____________________________________________________________
consensus             CGGCGAAGTCGATATCCATCATAATCTTGCAAGAGGTACAGTTCTTTGTGATCGGAAATG
 
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JMSF026M15+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
JMSF012H06+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTC                       
JMSF012H16+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
JMSF011H06+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGG   
JMSF006K19+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
JMSF005N17+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
JMSF037K02+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
JMFS035A05+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCC         
JMSF042O14+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
JMSF039I02+           GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
                      ____________________________________________________________
consensus             GGAGAATAAGCTCCGAGATTGACGGAATCTCTTCCTCTCCAAGTCTCTCCCGTATGGTCT
 
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JMSF026M15+           CTCAACTCGGACTGTTTCC                                         
JMSF012H16+           CTCAACTCGGACTGTTTCCGACT                                     
JMSF006K19+           CTCAACTCGGACTGTTTCCG                                        
JMSF005N17+           CTCAACTCGGACTGTTTCCGACT                                     
JMSF037K02+           CTCAACTCGGACTGTTTCCGACTAAACAAA                              
JMSF042O14+           CTCAACTCGGACTGTTTCCGACTAAACAAAGTCCTGCATCACA                 
JMSF039I02+           CTCAACTCGGACTGTTTCCGACTAAACAAAGTCCTGCATCACACTCAATCTTAATTTTCC
                      ____________________________________________________________
consensus             CTCAACTCGGACTGTTTCCGACTAAACAAAGTCCTGCATCACACTCAATCTTAATTTTCC