Contig 006641:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039D20Sequence657006641 (2)ref|XP_009757024.1|3e-17PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Nicoti891006641 (2)gb|KHG05438.1|1e-05hypothetical protein F383_31026 [Gossypium arboreum] gb|KJB35522.1| hypothetical

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-                                                       ATAATTGGGTACTTG
                      ____________________________________________________________
consensus                                                          ATAATTGGGTACTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          ATAGATGAGTTCAAACAAAATAATGTCCAAAGGTTATTAATGAAGGCAGATTGTGAGATC
                      ____________________________________________________________
consensus             ATAGATGAGTTCAAACAAAATAATGTCCAAAGGTTATTAATGAAGGCAGATTGTGAGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          AGAGCTTCAAACACTTCTCTCCTTGCACTTGTATCTAAAGACACATCAAAAGCTGCATAT
                      ____________________________________________________________
consensus             AGAGCTTCAAACACTTCTCTCCTTGCACTTGTATCTAAAGACACATCAAAAGCTGCATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          TCTTAAGACTACAAAACAAGCAATAGATGATGGTCGTATAATTATTTGAGTGTATAATGC
                      ____________________________________________________________
consensus             TCTTAAGACTACAAAACAAGCAATAGATGATGGTCGTATAATTATTTGAGTGTATAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          CAAGCATTATGACATCAATACGAGCGCTGAATTAAAAGGTAGACCATTTAACAGTCCAAC
                      ____________________________________________________________
consensus             CAAGCATTATGACATCAATACGAGCGCTGAATTAAAAGGTAGACCATTTAACAGTCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          GGAATCAAGTTTCAGGATGCTCCAGCCTTCACCAAGTCTTCCAGTGCTTTCGAAATCTGT
                      ____________________________________________________________
consensus             GGAATCAAGTTTCAGGATGCTCCAGCCTTCACCAAGTCTTCCAGTGCTTTCGAAATCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          TGCTCTGAGAAGCCTTCTAATTGGAAGCCCCTTTCAACTCCCATATCTAATTTACAAATG
                      ____________________________________________________________
consensus             TGCTCTGAGAAGCCTTCTAATTGGAAGCCCCTTTCAACTCCCATATCTAATTTACAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          AAAAGATTCTATTAGTTGGAGCATCAGAAGAGAAACTTATCGCATTCTTCTTATATTTAC
                      ____________________________________________________________
consensus             AAAAGATTCTATTAGTTGGAGCATCAGAAGAGAAACTTATCGCATTCTTCTTATATTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          TAAGCAATGAGGAAAGCTAAACATAAAAGGCGCTTAAACTGGGGCACAAATGTCTTGAAA
                      ____________________________________________________________
consensus             TAAGCAATGAGGAAAGCTAAACATAAAAGGCGCTTAAACTGGGGCACAAATGTCTTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          ACCCCTAAAACAGTTTAACATATCGAAACAAACCAGAACCTGGAAAGAAACTGCTTTTTT
                      ____________________________________________________________
consensus             ACCCCTAAAACAGTTTAACATATCGAAACAAACCAGAACCTGGAAAGAAACTGCTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          TATATTCTGAGGAAAACCCTGAGGTCTAAATAATATGCCCAGCCTTCTAAACCCATTAAA
                      ____________________________________________________________
consensus             TATATTCTGAGGAAAACCCTGAGGTCTAAATAATATGCCCAGCCTTCTAAACCCATTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          CAGGCATATCCTATAGAACACAAATTATGCTGTGCAAAATTTCAACAATTCTCTTTTAAT
                      ____________________________________________________________
consensus             CAGGCATATCCTATAGAACACAAATTATGCTGTGCAAAATTTCAACAATTCTCTTTTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          CACACCCACACTTACACTGTTGTAAAAATCGACCTAGGTTGCCCGGGGATTTCAGGCTTA
                      ____________________________________________________________
consensus             CACACCCACACTTACACTGTTGTAAAAATCGACCTAGGTTGCCCGGGGATTTCAGGCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          GGCGTCTTTTAGTCAGCCAGCCAACTAGCGCCCAACTCGACTAAGTCAACGGAGTTTTTT
                      ____________________________________________________________
consensus             GGCGTCTTTTAGTCAGCCAGCCAACTAGCGCCCAACTCGACTAAGTCAACGGAGTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          TCTTTTAATAATTTGGCTTGNTTCGCTCAACAAGCCAAATTTCCTTTCTCATTACCTATG
JMSF039D20+              TTTAATAATTTGGCTTGTTTCGCTCAACAAGCCAAATTTCCTTTCTCATTACCTATT
                      ____________________________________________________________
consensus             TCTTTTAATAATTTGGCTTGTTTCGCTCAACAAGCCAAATTTCCTTTCTCATTACCTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039D20-          GATTTCTGCCTAAATNAGAGGTAA                                    
JMSF039D20+           GATTTCTGCCTAAATTAGAGGTAAAGCCATCAATAGCTTACCCTTAATCAGCACAAGTCC
                      ____________________________________________________________
consensus             GATTTCTGCCTAAATTAGAGGTAAAGCCATCAATAGCTTACCCTTAATCAGCACAAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           AAACTCCAGAGTATGAAAATGGGGTCTTTACCATCCCCAATTATCACATTAACTACCCAA
                      ____________________________________________________________
consensus             AAACTCCAGAGTATGAAAATGGGGTCTTTACCATCCCCAATTATCACATTAACTACCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           CCAAAATACCAGATTGTTTAAAGCCTTGAACAACCAATCTCAATCAGAAAGAACACATTG
                      ____________________________________________________________
consensus             CCAAAATACCAGATTGTTTAAAGCCTTGAACAACCAATCTCAATCAGAAAGAACACATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           AGTACACAAAAATTGAACAAAGCAGGAAATTTTGAATAGGTAAATCAATAGCCAGGTTGA
                      ____________________________________________________________
consensus             AGTACACAAAAATTGAACAAAGCAGGAAATTTTGAATAGGTAAATCAATAGCCAGGTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           ATTAGCAACATCTGAAGTCCAATTATCACGAAATACAAACTAGAAATCGAGAAATTTACC
                      ____________________________________________________________
consensus             ATTAGCAACATCTGAAGTCCAATTATCACGAAATACAAACTAGAAATCGAGAAATTTACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           GAATCTGGCCCAAATCTGAGGCTCAATGGAGCTGGCCTCCCGGATAAGGATGGGCAATTT
                      ____________________________________________________________
consensus             GAATCTGGCCCAAATCTGAGGCTCAATGGAGCTGGCCTCCCGGATAAGGATGGGCAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           AGGATTATGGGTCTTGATTTGTTTGTAGTTATTCTCAATAAAAGCCCTATATTCAAAGAC
                      ____________________________________________________________
consensus             AGGATTATGGGTCTTGATTTGTTTGTAGTTATTCTCAATAAAAGCCCTATATTCAAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           AAATAAGTATACAATTTACACCGTCAAAAACAGAAAGGGGAACCAGACGAAGACATTATT
                      ____________________________________________________________
consensus             AAATAAGTATACAATTTACACCGTCAAAAACAGAAAGGGGAACCAGACGAAGACATTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           GATACCTCAAAGGAGCGCTGGAAGGTGAATTAGGCGAGAATAAGATCCGAATCTCCTTGA
                      ____________________________________________________________
consensus             GATACCTCAAAGGAGCGCTGGAAGGTGAATTAGGCGAGAATAAGATCCGAATCTCCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039D20+           GATTTCTCGAGAGCTGTCCTGTCCACGCCATCTCTTCGCTTTCCACTGCGTAGCTCTCCC
                      ____________________________________________________________
consensus             GATTTCTCGAGAGCTGTCCTGTCCACGCCATCTCTTCGCTTTCCACTGCGTAGCTCTCCC