Contig 006638:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF038P12-                                                   AAAGCAGCTTGTCAATCTA
                      ____________________________________________________________
consensus                                                      AAAGCAGCTTGTCAATCTA
 
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rJMSF038P12-          GTTTACTATGTACACAACCGCACAAAATGTTGTCTTAAGATTATTATCAAACGTTCAAAT
                      ____________________________________________________________
consensus             GTTTACTATGTACACAACCGCACAAAATGTTGTCTTAAGATTATTATCAAACGTTCAAAT
 
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rJMSF038P12-          CTATATGCACTCATTTGCATGGGGCGAGACAAATTTACAGGTTAACAGTTTGAAGCCTGA
                      ____________________________________________________________
consensus             CTATATGCACTCATTTGCATGGGGCGAGACAAATTTACAGGTTAACAGTTTGAAGCCTGA
 
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rJMSF038P12-          GAAGAGGTCGGCTGTGGCTTGCCAGACTCGTTCAGCGGTGTTGATTTCGACCCCAGATTG
                      ____________________________________________________________
consensus             GAAGAGGTCGGCTGTGGCTTGCCAGACTCGTTCAGCGGTGTTGATTTCGACCCCAGATTG
 
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rJMSF038P12-          CAATCAGCCTGCAATGATGCCAACCATGCATCTACCTGTATTCTGGAAGTACTGGAGCAC
                      ____________________________________________________________
consensus             CAATCAGCCTGCAATGATGCCAACCATGCATCTACCTGTATTCTGGAAGTACTGGAGCAC
 
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rJMSF038P12-          TCGTATCGCAACCCTTGACGGGTTAAAATATAAAAGCAATGCTGAGCTTCCTCACCTTCT
                      ____________________________________________________________
consensus             TCGTATCGCAACCCTTGACGGGTTAAAATATAAAAGCAATGCTGAGCTTCCTCACCTTCT
 
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rJMSF038P12-          CGTGTGAGACAAGGAAGTGGACCAACTTCAACAATATCTGACAGCATGGTGGAGTCCTGA
                      ____________________________________________________________
consensus             CGTGTGAGACAAGGAAGTGGACCAACTTCAACAATATCTGACAGCATGGTGGAGTCCTGA
 
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rJMSF038P12-          GGACTCAAATCAGTAGACAACATATACAGGTATAGACAAGATCCATGGAGGACAACAAAT
                      ____________________________________________________________
consensus             GGACTCAAATCAGTAGACAACATATACAGGTATAGACAAGATCCATGGAGGACAACAAAT
 
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rJMSF038P12-          CTAGGAACCCAGTCATCAACTTCAGCATCATCAAGTGGAGGAAGTTCTCCAGGTAATGCT
JMFN015O06+                 ACCCAGTCATCAACTTCAGCATCATCAAGTGGAGGAAGTTCTCCAGGTAATGCT
JMSF038P12+                                 CAGCATCATCAAGTGGAGGAAGTTCTCCAGGTAATGCT
                      ____________________________________________________________
consensus             CTAGGAACCCAGTCATCAACTTCAGCATCATCAAGTGGAGGAAGTTCTCCAGGTAATGCT
 
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rJMSF038P12-          GCCCATCTCATTCTCATGTAAAGGTATCCAGAGAGACGAGCAGATCGTAATATCTCATCT
JMFN015O06+           GCCCATCTCATTCTCATGTAAAGGTATCCAGAGAGACGAGCAGATCGTAATATCTCATCT
JMSF038P12+           GCCCATCTCATTCTCATGTAAAGGTATCCAGAGAGACGAGCAGATCGTAATATCTCATCT
                      ____________________________________________________________
consensus             GCCCATCTCATTCTCATGTAAAGGTATCCAGAGAGACGAGCAGATCGTAATATCTCATCT
 
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rJMSF038P12-          ACATGTTCTAATTGAGCTTTCAAGTGCGACTCTCTTTCTTCTAAATCATTGATTTCAGAT
JMFN015O06+           ACATGTTCTAATTGAGCTTTCAAGTGCGACTCTCTTTCTTCTAAATCATTGATTTCAGAT
JMSF038P12+           ACATGTTCTAATTGAGCTTTCAAGTGCGACTCTCTTTCTTCTAAATCATTGATTTCAGAT
                      ____________________________________________________________
consensus             ACATGTTCTAATTGAGCTTTCAAGTGCGACTCTCTTTCTTCTAAATCATTGATTTCAGAT
 
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rJMSF038P12-          CGAAGAGACGCTACCTCTACTGCACTCAAAACCACCTTTTCCTGGCCATCTGTGTCAGCT
JMFN015O06+           CGAAGAGACGCTACCTCTACTGCACTCAAAACCACCTTTTCCTGGCCATCTGTGTCAGCT
JMFN040J19+                                            ACCTTTTCCTGGCCATCTGTGTCAGCT
JMSF038P12+           CGAAGAGACGCTACCTCTACTGCACTCAAAACCACCTTTTCCTGGCCATCTGTGTCAGCT
                      ____________________________________________________________
consensus             CGAAGAGACGCTACCTCTACTGCACTCAAAACCACCTTTTCCTGGCCATCTGTGTCAGCT
 
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rJMSF038P12-          ACCCAAGGCAATCTTCGTAAGCTCAGTAACCTCAGCATTGATACTGTGCTTTTTAACTTA
JMFN015O06+           ACCCAAGGCAATCTTCGTAAGCTCAGTAACCTCAGCATTGATACTGTGCTTTTTAACTTA
JMFN040J19+           ACCCAAGGCAATCTTCGTAAGCTCAGTAACCTCAGCATTGATACTGTGCTTTTTAACTTA
JMSF038P12+           ACCCAAGGCAATCTTCGTAAGCTCAGTAACCTCAGCATTGATACTGTGCTTTTTAACTTA
                      ____________________________________________________________
consensus             ACCCAAGGCAATCTTCGTAAGCTCAGTAACCTCAGCATTGATACTGTGCTTTTTAACTTA
 
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rJMSF038P12-          CTCCGGGTCCACGATCCGCTGCACGACCTATGCTAA                        
JMFN015O06+           CTCCGGGTCCACGATCCGCTGCACGACCTATGCTAATAAAAGACACAGGAGCTAAAAGAG
JMFN040J19+           CTCCGGGTCCACGATCCGCTGCACGACCTAT-------------------GCTAAAAGAG
JMSF038P12+           CTCCGGGTCCACGATCCGCTGCACGACCTAT-------------------GCTAAAAGAG
                      ____________________________________________________________
consensus             CTCCGGGTCCACGATCCGCTGCACGACCTATGCTAA--------------GCTAAAAGAG
 
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JMFN015O06+           TTATCGTAGCTATTTCTCAAAGGCGTGGATACAGTTGGGGTTTGAGGAGAGTCTGCACCA
JMFN040J19+           TTATCGTAGCTATTTCTCAAAGGCGTGGATACAGTTGGGGTTTGAGGAGAGTCTGCACCA
JMSF038P12+           TTATCGTAGCTATTTCTCAAAGGCGTGGATACAGTTGGGGTTTGAGGAGAGTCTGCACCA
                      ____________________________________________________________
consensus             TTATCGTAGCTATTTCTCAAAGGCGTGGATACAGTTGGGGTTTGAGGAGAGTCTGCACCA
 
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JMFN015O06+           GGCATTGAAGCTTGAAAATGGTCAGGGAAAACTTCTATTCCACGAGGACCATCGCCCATG
JMFN040J19+           GGCATTGAAGCTTGAAAATGGTCAGGGAAAACTTCTATTCCACGAGGACCATCGCCCATG
JMSF038P12+           GGCATTGAAGCTTGAAAATGGTCAGGGAAAACTTCTATTCCACGAGGACCATCGCCCATG
                      ____________________________________________________________
consensus             GGCATTGAAGCTTGAAAATGGTCAGGGAAAACTTCTATTCCACGAGGACCATCGCCCATG
 
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JMFN015O06+           AAGCTAATGCTTACTTAGATACCTCTTCGGCGGTCTGTCGACGGGAAGAGTTTGTAGTTG
JMFN040J19+           AAGCTAATGCTTACTTAGATACCTCTTCGGCGGTCTGTCGACGGGAAGAGTTTGTAGTTG
JMSF038P12+           AAGCTAATGCTTACTTAGATACCTCTTCGGCGGTCTGTCGACGGGAAGAGTTTGTAGTTG
                      ____________________________________________________________
consensus             AAGCTAATGCTTACTTAGATACCTCTTCGGCGGTCTGTCGACGGGAAGAGTTTGTAGTTG
 
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JMFN015O06+           AGAAGGAGAGCAGGTGATGAAGGTTCGTGTTGGGGGATTGCTGTTTCACGAGATGACAGA
JMFN040J19+           AGAAGGAGAGCAGGTGATGAAGGTTCGTGTTGGGGGATTGCTGTTTCACGAGATGACAGA
JMSF038P12+           AGAAGGAGAGCAGGTGATGAAGGTTCGTGTTGGGGGATTGCTGTTTCACGAGATGACAGA
                      ____________________________________________________________
consensus             AGAAGGAGAGCAGGTGATGAAGGTTCGTGTTGGGGGATTGCTGTTTCACGAGATGACAGA
 
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JMFN015O06+           GCGAAAATGTA                                                 
JMFN040J19+           GCGAAAATGTA                                                 
JMSF038P12+           GCGAAAATGTACGAATGCAATGATATGTCAAGTTTGGTAAACCCCTAGACTAACAGCTTC
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consensus             GCGAAAATGTACGAATGCAATGATATGTCAAGTTTGGTAAACCCCTAGACTAACAGCTTC