Contig 006633:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038F02Sequence650006633 (2)ref|XP_009595484.1|2e-08PREDICTED: RING-H2 finger protein ATL2-like [Nicotiana tomentosiformis]590006633 (2)ref|XP_009595484.1|2e-08PREDICTED: RING-H2 finger protein ATL2-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF038F02+                    GACTGCACTGCACTCAATTCGTATCTTGAGGCCGGAAGCCATGGATGACA
JMSF038F02-                     GACTGCACTGCACTCAATTCGTATCTTGAGGCCGGAAGCCATGGATGACA
                      ____________________________________________________________
consensus                       GACTGCACTGCACTCAATTCGTATCTTGAGGCCGGAAGCCATGGATGACA
 
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rJMSF038F02+          GCTCAATTAGAGAGTGTTGCAAATCTTCAAACTACGTCTTCACCGGAAAATTCATGTTAA
JMSF038F02-           GCTCAATTAGAGAGTGTTGCAAATCTTCAAACTACGTCTTCACCGGAAAATTCATGTTAA
                      ____________________________________________________________
consensus             GCTCAATTAGAGAGTGTTGCAAATCTTCAAACTACGTCTTCACCGGAAAATTCATGTTAA
 
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rJMSF038F02+          TCTCTGTAGTTGTTGTTGTGTTGGTTTGTGTTTTCTTAGGTTTCTTCCACGTGTTTGCAC
JMSF038F02-           TCTCTGTAGTTGTTGTTGTGTTGGTTTGTGTTTTCTTAGGTTTCTTCCACGTGTTTGCAC
                      ____________________________________________________________
consensus             TCTCTGTAGTTGTTGTTGTGTTGGTTTGTGTTTTCTTAGGTTTCTTCCACGTGTTTGCAC
 
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rJMSF038F02+          GGCGCCGCCGCAAACTGGGTTTCCTCGAAGACTCCAGTGACGCCGTCGACGGTGCTAGCG
JMSF038F02-           GGCGCCGCCGCAAACTGGGTTTCCTCGAAGACTCCAGTGACGCCGTCGACGGTGCTAGCG
                      ____________________________________________________________
consensus             GGCGCCGCCGCAAACTGGGTTTCCTCGAAGACTCCAGTGACGCCGTCGACGGTGCTAGCG
 
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rJMSF038F02+          CTCATGGACTTGACCCGTCTTCACAAGAATCCCTTCCGACGACTTCTGTCCATTCGTCGG
JMSF038F02-           CTCATGGACTTGACCCGTCTTCACAAGAATCCCTTCCGACGACTTCTGTCCATTCGTCGG
                      ____________________________________________________________
consensus             CTCATGGACTTGACCCGTCTTCACAAGAATCCCTTCCGACGACTTCTGTCCATTCGTCGG
 
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rJMSF038F02+          CGGAAGGACGCGACGGCCGTCCACATGAATGCTCCGTGTACTTGTCGGAGCTCAAAGATA
JMSF038F02-           CGGAAGGACGCGACGGCCGTCCACATGAATGCTCCGTGTACTTGTCGGAGCTCAAAGATA
                      ____________________________________________________________
consensus             CGGAAGGACGCGACGGCCGTCCACATGAATGCTCCGTGTACTTGTCGGAGCTCAAAGATA
 
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rJMSF038F02+          TTGAGACGGGTCGGGTCTTGCCCAAATGCGGGCATTGCTTCCTTCCATGCTGATTGCAGT
JMSF038F02-           TTGAGACGGGTCGGGTCTTGCCCAAATGCGGGCATTGCTTCCTTCCATGCTGATTGCAGT
                      ____________________________________________________________
consensus             TTGAGACGGGTCGGGTCTTGCCCAAATGCGGGCATTGCTTCCTTCCATGCTGATTGCAGT
 
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rJMSF038F02+          GGACTATGGTTTACATAAGTGTGTAAATTATACTTAAGATTTTAGTATATTAAAAATATA
JMSF038F02-           GGACTATGGTTTACATAAGTGTGTAAATTATACTTAAGATTTTAGTATATTAAAAATATA
                      ____________________________________________________________
consensus             GGACTATGGTTTACATAAGTGTGTAAATTATACTTAAGATTTTAGTATATTAAAAATATA
 
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rJMSF038F02+          CATTATATTAAAAAAATTATATTATTTGTATAATATACATTCATTCGGTCTGTAGGAATA
JMSF038F02-           CATTATATTAAAAAAATTATATTATTTGTATAATATACATTCATTCGGTCTGTAGGAATA
                      ____________________________________________________________
consensus             CATTATATTAAAAAAATTATATTATTTGTATAATATACATTCATTCGGTCTGTAGGAATA
 
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rJMSF038F02+          TATATGTTAATTGTGTAGAGTTGTATCTATAAGATTGTGTCTTTTAAATCTGTATATATT
JMSF038F02-           TATATGTTAATTGTGTAGAGTTGTATCTATAAGATTGTGTCTTTTAAATCTGTATATATT
                      ____________________________________________________________
consensus             TATATGTTAATTGTGTAGAGTTGTATCTATAAGATTGTGTCTTTTAAATCTGTATATATT
 
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JMSF038F02-           TGTCTGTTGTTTTTTTATTGAGACATGAGAGTAATACAATAAATCCTTCTAAAAAAAAAA
                      ____________________________________________________________
consensus             TGTCTGTTGTTTTTTTATTGAGACATGAGAGTAATACAATAAATCCTTCTAAAAAAAAAA