| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011F22 | Sequence | 614 | 006630 (5) | ref|XP_009772814.1| | 5e-67 | PREDICTED: histone-lysine N-methyltransferase setd3 [Nicotiana sylvestris] | 764 | 006809 (5) | ref|XP_002509559.1| | 4e-48 | conserved hypothetical protein [Ricinus communis] gb|EEF50946.1| conserved hypot |
| JMFN002E01 | Sequence | 201 | 006630 (5) | ||||||||
| JMSF008F24 | Sequence | 390 | 006630 (5) | ref|XP_009772814.1| | 5e-35 | PREDICTED: histone-lysine N-methyltransferase setd3 [Nicotiana sylvestris] | 783 | 006809 (5) | ref|XP_002509559.1| | 1e-73 | conserved hypothetical protein [Ricinus communis] gb|EEF50946.1| conserved hypot |
| JMSF019G06 | Sequence | 581 | 006630 (5) | ref|XP_009772814.1| | 2e-80 | PREDICTED: histone-lysine N-methyltransferase setd3 [Nicotiana sylvestris] | 765 | 006809 (5) | ref|XP_002509559.1| | 6e-68 | conserved hypothetical protein [Ricinus communis] gb|EEF50946.1| conserved hypot |
| JMSF038A24 | Sequence | 647 | 006630 (5) | ref|XP_009772814.1| | 1e-67 | PREDICTED: histone-lysine N-methyltransferase setd3 [Nicotiana sylvestris] | 822 | 006809 (5) | ref|XP_004303999.1| | 2e-82 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth |
This contig is upended
. : . : . : . : . : . :
JMSF019G06+ TTAATGTATGGATACCAAAAGGATTT
____________________________________________________________
consensus TTAATGTATGGATACCAAAAGGATTT
. : . : . : . : . : . :
JMSF019G06+ CTTTCCTTGCTTCTTTTCATACATGAGATAGAGTGCCAAGCAGGCTAGTTCTGATAATTT
JMFF011F22+ TTTTCATACATGAGATAGAGTGCCAAGCAGGCTAGTACTGATAATTT
JMSF038A24+ TTTTCATACATGAGATAGAGTGCCAAGCAGGCTAGTTCTGATAATTT
____________________________________________________________
consensus CTTTCCTTGCTTCTTTTCATACATGAGATAGAGTGCCAAGCAGGCTAGTTCTGATAATTT
. : . : . : . : . : . :
JMSF019G06+ GTTGGTTGTCAAGAGTTCAGCGACAGTCTCGTTTCCCAGAACCCTCTCCAATGTTACCAC
JMFF011F22+ GTTGGTTGTCAAGAGTTCAGCGACAGTCTCGTTTCCCAGAACCCTCTCCAATGTTACCAC
JMSF038A24+ GTTGGTTGTCAAGAGTTCAGCGACAGTCTCGTTTCCCAGAACCCTCTCCAATGTTACCAC
____________________________________________________________
consensus GTTGGTTGTCAAGAGTTCAGCGACAGTCTCGTTTCCCAGAACCCTCTCCAATGTTACCAC
. : . : . : . : . : . :
JMSF008F24+ TTCGCTGGCGGCAAC
JMSF019G06+ CAACGAGTTTGGCACAGAAAATGCAATATCACCTGTCTGAAGATCTTCGCTGGCGGCAAC
JMFF011F22+ CAACGAGTTTGGCACAGAAAATGCAATATCACCTGTCTGAAGATCTTCGCTGGCGGCAAC
JMSF038A24+ CAACGAGTTTGGCACAGAAAATGCAATATCACCTGTCTGAAGATCTTCGCTGGCGGCAAC
____________________________________________________________
consensus CAACGAGTTTGGCACAGAAAATGCAATATCACCTGTCTGAAGATCTTCGCTGGCGGCAAC
. : . : . : . : . : . :
JMSF008F24+ GTAGTGAATGGGGCGATGTTTAGCATTGTGGGAGGGCCTCTCATCAAGCACGACCTTGCA
JMSF019G06+ GTAGTGAATGGGGCGATGTTTAGCATTGTGGGAGGGCCTCTCATCAAGCACGACCTTGCA
JMFF011F22+ GTAGTGAATGGGGCGATGTTTAGCACTGTGGGAGGGCCTCTCATCAAGCACGACCTTGCA
JMSF038A24+ GTAGTGAATGGGGCGATGTTTAGCATTGTGGGAGGGCCTCTCATCAAGCACGACCTTGCA
____________________________________________________________
consensus GTAGTGAATGGGGCGATGTTTAGCATTGTGGGAGGGCCTCTCATCAAGCACGACCTTGCA
. : . : . : . : . : . :
JMSF008F24+ AGGAGGGAGTCCGTTGTTGTGCATCCAAGATTTCAAGTCACCCAACTCGTGGTCTTCTGA
JMSF019G06+ AGGAGGGAGTCCGTTGTTGTGCATCCAAGATTTCAAGTCACCCAACTCGTGGTCTTCTGA
JMFF011F22+ AGGAGGGAGTCCGTTGTTGTGCATCCAAGATTTCAAGTCACCCAACTCGTGGTCTTCTGA
JMSF038A24+ AGGAGGGAGTCCGTTGTTGTGCATCCAAGATTTCAAGTCACCCAACTCGTGGTCTTCTGA
____________________________________________________________
consensus AGGAGGGAGTCCGTTGTTGTGCATCCAAGATTTCAAGTCACCCAACTCGTGGTCTTCTGA
. : . : . : . : . : . :
JMSF008F24+ CTTTACAGTGACGACCTCGTGGGATTTGTGGTGTCCATTGGGAGAGCCAGCGATGAGGGT
JMSF019G06+ CTTTACAGTGACGACCTCGTGGGATTTGTGGTGTCCATTGGGAGAGCCAGCGATGAGGGT
JMFF011F22+ CTTTACAGTGACGACCTCGTGGGATTTGTGGTGTCCATTGGGAGAGCCAGCGATGAGGGT
JMSF038A24+ CTTTACAGTGACGACCTCGTGGGATTTGTGGTGTCCATTGGGAGAGCCAGCGATGAGGGT
____________________________________________________________
consensus CTTTACAGTGACGACCTCGTGGGATTTGTGGTGTCCATTGGGAGAGCCAGCGATGAGGGT
. : . : . : . : . : . :
JMSF008F24+ TTCGGAGTTGGAAGCAGAGCACATGTTCTTCCATCGACGCAAGTTGATGTGTTTGGGATT
JMSF019G06+ TTCGGAGTTGGAAGCAGAGCACATGTTCTTCCATCGACGCAAGTTGATGTGTTTGGGATT
JMFF011F22+ TTCGGAGTTGGAAGCAGAGCACATGTTCTTCCATCGACGCAAGTTGATGTGTTTGGGATT
JMFN002E01+ GTTCTTCCATCGACGCAAGTTGATGTGTTTGGGATT
JMSF038A24+ TTCGGAGTTGGAAGCAGAGCACATGTTCTTCCATCGACGCAAGTTGATGTGTTTGGGATT
____________________________________________________________
consensus TTCGGAGTTGGAAGCAGAGCACATGTTCTTCCATCGACGCAAGTTGATGTGTTTGGGATT
. : . : . : . : . : . :
JMSF008F24+ GAAGAGCAAGGAATGGGAAACCCTAGAAAGAGCTAAGAGAGGGCAATGATGAGTGGGAGA
JMSF019G06+ GAAGAGCAAGGAATGGGAAACCCTAGAAAGAGCTAAGAGAGGGCAATGATGAGTGGGAGA
JMFF011F22+ GAAGAGCAAGGAATGGGAAACCCTAGAAAGAGCTAAGAGAGGGCAATGATGAGTGGGAGA
JMFN002E01+ GAAGAGCAAGGAATGGGAAACCCTAGAAAGAGCTAAGAGAGGGCAATGATGAGTGGGAGA
JMSF038A24+ GAAGAGCAAGGAATGGAAAACCCTAGAAAGAGCTAAGAGAGGGCAATGATGAGTGGGAGA
____________________________________________________________
consensus GAAGAGCAAGGAATGGGAAACCCTAGAAAGAGCTAAGAGAGGGCAATGATGAGTGGGAGA
. : . : . : . : . : . :
JMSF008F24+ ACGAAACGGAGAAGAAATACATTTGGCTTGAAGATAAGCCACGTCCATGGCGAAAGAATT
JMSF019G06+ ACGAAACGGAGAAGAAATACATTTGGCTTGAAGATAAGCCACGTCCATGGCGAAAGAATT
JMFF011F22+ ACGAAACGGAGAAGAAATACATTTGGCTTGAAGATAAGCCACGTCCATGGCGAAAGAATT
JMFN002E01+ ACGAAACGGAGAAGAAATACATTTGGCTTGAAGATAAGCCACGTCCATGGCGAAAGAATT
JMSF038A24+ ACGAAACGGAGAAGAAATACATTTGGCTTGAAGATAAGCCACGTCCATGGCGAAAGAATT
____________________________________________________________
consensus ACGAAACGGAGAAGAAATACATTTGGCTTGAAGATAAGCCACGTCCATGGCGAAAGAATT
. : . : . : . : . : . :
JMSF008F24+ TCAATCCTTCA
JMSF019G06+ TCAATCCTTCACT
JMFF011F22+ TCAATCCTTCACTTGCATAAAGAATAGAAATGATGATTTTTAGGGTTAAAGCTGGGTTGG
JMFN002E01+ TCAATCCTTCACTTGCATAAAGAATAGAAATGATGATTTT
JMSF038A24+ TCAATCCTTCACTTGCATAAAGAATAGAAATGATGATTTTTAGGGTTAAAGCTGGGTTGG
____________________________________________________________
consensus TCAATCCTTCACTTGCATAAAGAATAGAAATGATGATTTTTAGGGTTAAAGCTGGGTTGG
. : . : . : . : . : . :
JMFF011F22+ GTGGGTGGATTTTCTCAGGCTGGTGAT
JMSF038A24+ GTGGGTGGATTTTCTCAGGCTGGTGATTTCTGATATGATATTTTTTCTTCAGAGCTTACC
____________________________________________________________
consensus GTGGGTGGATTTTCTCAGGCTGGTGATTTCTGATATGATATTTTTTCTTCAGAGCTTACC