Contig 006625:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS121A03Sequence577006625 (3)ref|XP_006345646.1|169PREDICTED: uncharacterized protein LOC102580486 [Solanum tuberosum]
JMSF015J18Sequence467006625 (3)ref|XP_006345646.1|112PREDICTED: uncharacterized protein LOC102580486 [Solanum tuberosum]779008595 (2)ref|XP_009787592.1|360PREDICTED: uncharacterized protein LOC104235504 [Nicotiana sylvestris]
JMSF037E01Sequence667006625 (3)ref|XP_006345646.1|208PREDICTED: uncharacterized protein LOC102580486 [Solanum tuberosum]723008595 (2)emb|CAN74123.1|2e-78hypothetical protein VITISV_029594 [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037E01+                                                                TCCAGCA
                      ____________________________________________________________
consensus                                                                  TCCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037E01+           GTGCTATTTGCCTGCTTTACTACATAGTCCAAAGTGTTTATCGTACTACTGTGAAATTTT
                      ____________________________________________________________
consensus             GTGCTATTTGCCTGCTTTACTACATAGTCCAAAGTGTTTATCGTACTACTGTGAAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           CCCTGCCCAAAGTATAGAATAACACATCCAACTATTGCAACTACGGTGAACAATACAAGG
JMSF037E01+           CCCTGCCCAAAGTATAGAATAACACATCCAACTATTGCAACTACGGTGAACAATACAAGG
                      ____________________________________________________________
consensus             CCCTGCCCAAAGTATAGAATAACACATCCAACTATTGCAACTACGGTGAACAATACAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           AGAATAAGCGAAAGAGCATAAGCTATTCGAGAATATCCATAAGGTTCCCTTCGGCAGCAA
JMSF015J18+                                                             TCGGCAGCAA
JMSF037E01+           AGAATAAGCGAAAGAGCATAAGCTATTCGAGAATATCCATAAGGTTCCCTTCGGCAGCAA
                      ____________________________________________________________
consensus             AGAATAAGCGAAAGAGCATAAGCTATTCGAGAATATCCATAAGGTTCCCTTCGGCAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           CAGAAGCAAAAGCAAATGAACAATAAGCATAGTCCAAAGATCGCGAACCAGATGAGAGCG
JMSF015J18+           CAGAAGCAAAAGCAAATGAACAATAAGCATAGTCCAAAGATCGCGAACCAGATGAGAGCG
JMSF037E01+           CAGAAGCAAAAGCAAATGAACAATAAGCATAGTCCAAAGATCGCGAACCAGATGAGAGCG
                      ____________________________________________________________
consensus             CAGAAGCAAAAGCAAATGAACAATAAGCATAGTCCAAAGATCGCGAACCAGATGAGAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           ACTAAGAAGAACGGAACTGCAGTAAAAGCCACAGAACCCCAGTAATGGCGGTTGCTAATG
JMSF015J18+           ACTAAGAAGAACGGAACTGCAGTAAAAGCCACAGAACCCCAGTAATGGCGGTTGCTAATG
JMSF037E01+           ACTAAGAAGAACGGAACTGCAGTAAAAGCCACAGAACCCCAGTAATGGCGGTTGCTAATG
                      ____________________________________________________________
consensus             ACTAAGAAGAACGGAACTGCAGTAAAAGCCACAGAACCCCAGTAATGGCGGTTGCTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           TTCCATCCACCTGTGTATCTCTTGAAATCATCGAGAGGGTCTTTCCTATATGTCCTCTTA
JMSF015J18+           TTCCATCCACCTGTGTATCTCTTGAAATCATCGAGAGGGTCTTTCCTATATGTCCTCTTA
JMSF037E01+           TTCCATCCACCTGTGTATCTCTTGAAATCATCGAGAGGGTCTTTCCTATATGTCCTCTTA
                      ____________________________________________________________
consensus             TTCCATCCACCTGTGTATCTCTTGAAATCATCGAGAGGGTCTTTCCTATATGTCCTCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           GCAGCCAGGATGAGTGATGAGTTCAGTGGAGGCTCTTCTTCTTCAAGAACCCTTCTTCTC
JMSF015J18+           GCAGCCAGGATGAGTGATGAGTTCAGTGGAGGCTCTTCTTCTTCAAGAACCCTTCTTCTC
JMSF037E01+           GCAGCCAGGATGAGTGATGAGTTCAGTGGAGGCTCTTCTTCTTCAAGAACCCTTCTTCTC
                      ____________________________________________________________
consensus             GCAGCCAGGATGAGTGATGAGTTCAGTGGAGGCTCTTCTTCTTCAAGAACCCTTCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           TCCCCAAAAATCACTTCATCAGTACTATAAATTTCCCCTTGAAAGTCCCCTGAAAGGGGA
JMSF015J18+           TCCCCAAAAATCACTTCATCAGTACTATAAATTTCCCCTTGAAAGTCCCCTGAAAGGGGA
JMSF037E01+           TCCCCAAAAATCACTTCATCAGTACTATAAATTTCCCCTTGAAAGTCCCCTGAAAGGGGA
                      ____________________________________________________________
consensus             TCCCCAAAAATCACTTCATCAGTACTATAAATTTCCCCTTGAAAGTCCCCTGAAAGGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           AAGTGGGAAATGTGCTGATGTTTTGCTTTTTCTCCTCCTCCAAAACAGACAAAGGTAGAG
JMSF015J18+           AAGTGGGAAATGTGCTGATGTTTTGCTTTTTCTCCTCCTCCAAAACAGACAAAGGTAGAG
JMSF037E01+           AAGTGGGAAATGTGCTGATGTTTTGCTTTTTCTCCTCCTCCAAAACAGACAAAGGTAGAG
                      ____________________________________________________________
consensus             AAGTGGGAAATGTGCTGATGTTTTGCTTTTTCTCCTCCTCCAAAACAGACAAAGGTAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           GAAGAGAAAAGCAAGGAAATAGTTAGAAGAGAAAAGAGGAGTGACCCTTTGCACAGCATT
JMSF015J18+           GAAGAGAAAAGCAAGGAAATAGTTAGAAGAGAAAAGAGGAGTGACCCTTTGCACAGCATT
JMSF037E01+           GAAGAGAAAAGCAAGGAAATAGTTAGAAGAGAAAAGAGGAGTGACCCTTTGCACAGCATT
                      ____________________________________________________________
consensus             GAAGAGAAAAGCAAGGAAATAGTTAGAAGAGAAAAGAGGAGTGACCCTTTGCACAGCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS121A03+           GTGTTTGTACCAGCTACTATGGCTGGAAATCTCCTT                        
JMSF015J18+           GTGTTTGTACCAGCTACTATGGCTGGAAATCTCCTT                        
JMSF037E01+           GTGTTTGTACCAGCTACTATGGCTGGAAATCTCCTTGGAAGCACTGGAGAGGGAAAGTCC
                      ____________________________________________________________
consensus             GTGTTTGTACCAGCTACTATGGCTGGAAATCTCCTTGGAAGCACTGGAGAGGGAAAGTCC